Gene : Carub.0001s0324 C. rubella v1.1
Defline:  (1 of 4) PTHR17204//PTHR17204:SF30 - PRE-MRNA PROCESSING PROTEIN PRP39-RELATED // SUBFAMILY NOT NAMED Genomic Order:  324
Name:  ? Carub.0001s0324 Secondary Identifier:  ? PAC:39230727
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s0324 0.5kb upstream 0.5kb upstream 2776 true scaffold_1: 1108515-1111290 Capsella rubella
Carub.0001s0324 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 1108515-1109014 Capsella rubella
Carub.0001s0324 0.5kb downstream 0.5kb downstream 2776 true scaffold_1: 1109015-1111790 Capsella rubella
Carub.0001s0324 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 1111291-1111790 Capsella rubella
Carub.0001s0324 1.0kb upstream 1.0kb upstream 3276 true scaffold_1: 1108015-1111290 Capsella rubella
Carub.0001s0324 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 1108015-1109014 Capsella rubella
Carub.0001s0324 1.0kb downstream 1.0kb downstream 3276 true scaffold_1: 1109015-1112290 Capsella rubella
Carub.0001s0324 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 1111291-1112290 Capsella rubella
Carub.0001s0324 2.0kb upstream 2.0kb upstream 4276 true scaffold_1: 1107015-1111290 Capsella rubella
Carub.0001s0324 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 1107015-1109014 Capsella rubella
Carub.0001s0324 2.0kb downstream 2.0kb downstream 4276 true scaffold_1: 1109015-1113290 Capsella rubella
Carub.0001s0324 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 1111291-1113290 Capsella rubella
Carub.0001s0324 5.0kb upstream 5.0kb upstream 7276 true scaffold_1: 1104015-1111290 Capsella rubella
Carub.0001s0324 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 1104015-1109014 Capsella rubella
Carub.0001s0324 5.0kb downstream 5.0kb downstream 7276 true scaffold_1: 1109015-1116290 Capsella rubella
Carub.0001s0324 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 1111291-1116290 Capsella rubella
Carub.0001s0324 10.0kb upstream 10.0kb upstream 12276 true scaffold_1: 1099015-1111290 Capsella rubella
Carub.0001s0324 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 1099015-1109014 Capsella rubella
Carub.0001s0324 10.0kb downstream 10.0kb downstream 12276 true scaffold_1: 1109015-1121290 Capsella rubella
Carub.0001s0324 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 1111291-1121290 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373779 5261 Brassicaceae View MSA
123838577 5264 Brassicales-Malvales View MSA
124349595 5266 SBM View MSA
124246914 5268 Malvidae View MSA
124072128 5270 Rosid View MSA
123746638 5271 Pentapetalae View MSA
122792580 5272 Eudicot View MSA
122047878 5273 Angiosperm View MSA
121349100 5274 Embryophyte View MSA
123426825 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain