Gene : Carub.0001s0359 C. rubella v1.1
Defline:  (1 of 3) K00025 - malate dehydrogenase (MDH1) Genomic Order:  359
Name:  ? Carub.0001s0359 Secondary Identifier:  ? PAC:39230253
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella GLUCONEO-PWY Capsella rubella pathologic  
Crubella GLYOXYLATE-BYPASS Capsella rubella pathologic  
Crubella PWY-5464 Capsella rubella pathologic  
Crubella PWY-561 Capsella rubella pathologic  
Crubella PWY-5690 Capsella rubella pathologic  
Crubella PWY66-399 Capsella rubella pathologic  
Crubella PWY-7115 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s0359 0.5kb upstream 0.5kb upstream 2605 true scaffold_1: 1252932-1255536 Capsella rubella
Carub.0001s0359 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 1255037-1255536 Capsella rubella
Carub.0001s0359 0.5kb downstream 0.5kb downstream 2605 true scaffold_1: 1252432-1255036 Capsella rubella
Carub.0001s0359 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 1252432-1252931 Capsella rubella
Carub.0001s0359 1.0kb upstream 1.0kb upstream 3105 true scaffold_1: 1252932-1256036 Capsella rubella
Carub.0001s0359 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 1255037-1256036 Capsella rubella
Carub.0001s0359 1.0kb downstream 1.0kb downstream 3105 true scaffold_1: 1251932-1255036 Capsella rubella
Carub.0001s0359 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 1251932-1252931 Capsella rubella
Carub.0001s0359 2.0kb upstream 2.0kb upstream 4105 true scaffold_1: 1252932-1257036 Capsella rubella
Carub.0001s0359 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 1255037-1257036 Capsella rubella
Carub.0001s0359 2.0kb downstream 2.0kb downstream 4105 true scaffold_1: 1250932-1255036 Capsella rubella
Carub.0001s0359 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 1250932-1252931 Capsella rubella
Carub.0001s0359 5.0kb upstream 5.0kb upstream 7105 true scaffold_1: 1252932-1260036 Capsella rubella
Carub.0001s0359 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 1255037-1260036 Capsella rubella
Carub.0001s0359 5.0kb downstream 5.0kb downstream 7105 true scaffold_1: 1247932-1255036 Capsella rubella
Carub.0001s0359 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 1247932-1252931 Capsella rubella
Carub.0001s0359 10.0kb upstream 10.0kb upstream 12105 true scaffold_1: 1252932-1265036 Capsella rubella
Carub.0001s0359 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 1255037-1265036 Capsella rubella
Carub.0001s0359 10.0kb downstream 10.0kb downstream 12105 true scaffold_1: 1242932-1255036 Capsella rubella
Carub.0001s0359 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 1242932-1252931 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379151 5261 Brassicaceae View MSA
123832560 5264 Brassicales-Malvales View MSA
124339900 5266 SBM View MSA
124244988 5268 Malvidae View MSA
124064013 5270 Rosid View MSA
123739138 5271 Pentapetalae View MSA
122789281 5272 Eudicot View MSA
122050336 5273 Angiosperm View MSA
121345674 5274 Embryophyte View MSA
123426378 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain