Gene : Carub.0006s0049 C. rubella v1.1
Defline:  (1 of 3) 4.1.1.1 - Pyruvate decarboxylase / Pyruvic decarboxylase Genomic Order:  49
Name:  ? Carub.0006s0049 Secondary Identifier:  ? PAC:39249949
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5486 Capsella rubella pathologic  
Crubella PWY-6330 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s0049 0.5kb upstream 0.5kb upstream 2623 true scaffold_6: 174542-177164 Capsella rubella
Carub.0006s0049 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 174542-175041 Capsella rubella
Carub.0006s0049 0.5kb downstream 0.5kb downstream 2623 true scaffold_6: 175042-177664 Capsella rubella
Carub.0006s0049 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 177165-177664 Capsella rubella
Carub.0006s0049 1.0kb upstream 1.0kb upstream 3123 true scaffold_6: 174042-177164 Capsella rubella
Carub.0006s0049 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 174042-175041 Capsella rubella
Carub.0006s0049 1.0kb downstream 1.0kb downstream 3123 true scaffold_6: 175042-178164 Capsella rubella
Carub.0006s0049 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 177165-178164 Capsella rubella
Carub.0006s0049 2.0kb upstream 2.0kb upstream 4123 true scaffold_6: 173042-177164 Capsella rubella
Carub.0006s0049 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 173042-175041 Capsella rubella
Carub.0006s0049 2.0kb downstream 2.0kb downstream 4123 true scaffold_6: 175042-179164 Capsella rubella
Carub.0006s0049 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 177165-179164 Capsella rubella
Carub.0006s0049 5.0kb upstream 5.0kb upstream 7123 true scaffold_6: 170042-177164 Capsella rubella
Carub.0006s0049 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 170042-175041 Capsella rubella
Carub.0006s0049 5.0kb downstream 5.0kb downstream 7123 true scaffold_6: 175042-182164 Capsella rubella
Carub.0006s0049 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 177165-182164 Capsella rubella
Carub.0006s0049 10.0kb upstream 10.0kb upstream 12123 true scaffold_6: 165042-177164 Capsella rubella
Carub.0006s0049 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 165042-175041 Capsella rubella
Carub.0006s0049 10.0kb downstream 10.0kb downstream 12123 true scaffold_6: 175042-187164 Capsella rubella
Carub.0006s0049 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 177165-187164 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379903 5261 Brassicaceae View MSA
123835679 5264 Brassicales-Malvales View MSA
124337711 5266 SBM View MSA
124242613 5268 Malvidae View MSA
124061112 5270 Rosid View MSA
123745857 5271 Pentapetalae View MSA
122791773 5272 Eudicot View MSA
122042059 5273 Angiosperm View MSA
121351042 5274 Embryophyte View MSA
123426958 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain