Gene : Carub.0001s1430 C. rubella v1.1
Defline:  (1 of 2) PTHR31388//PTHR31388:SF37 - FAMILY NOT NAMED // PEROXIDASE 4-RELATED Genomic Order:  1430
Name:  ? Carub.0001s1430 Secondary Identifier:  ? PAC:39228001
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5466 Capsella rubella pathologic  
Crubella PWY-7214 Capsella rubella pathologic  
Crubella PWY-7445 Capsella rubella pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s1430 0.5kb upstream 0.5kb upstream 1802 true scaffold_1: 5067000-5068801 Capsella rubella
Carub.0001s1430 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 5068302-5068801 Capsella rubella
Carub.0001s1430 0.5kb downstream 0.5kb downstream 1802 true scaffold_1: 5066500-5068301 Capsella rubella
Carub.0001s1430 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 5066500-5066999 Capsella rubella
Carub.0001s1430 1.0kb upstream 1.0kb upstream 2302 true scaffold_1: 5067000-5069301 Capsella rubella
Carub.0001s1430 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 5068302-5069301 Capsella rubella
Carub.0001s1430 1.0kb downstream 1.0kb downstream 2302 true scaffold_1: 5066000-5068301 Capsella rubella
Carub.0001s1430 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 5066000-5066999 Capsella rubella
Carub.0001s1430 2.0kb upstream 2.0kb upstream 3302 true scaffold_1: 5067000-5070301 Capsella rubella
Carub.0001s1430 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 5068302-5070301 Capsella rubella
Carub.0001s1430 2.0kb downstream 2.0kb downstream 3302 true scaffold_1: 5065000-5068301 Capsella rubella
Carub.0001s1430 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 5065000-5066999 Capsella rubella
Carub.0001s1430 5.0kb upstream 5.0kb upstream 6302 true scaffold_1: 5067000-5073301 Capsella rubella
Carub.0001s1430 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 5068302-5073301 Capsella rubella
Carub.0001s1430 5.0kb downstream 5.0kb downstream 6302 true scaffold_1: 5062000-5068301 Capsella rubella
Carub.0001s1430 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 5062000-5066999 Capsella rubella
Carub.0001s1430 10.0kb upstream 10.0kb upstream 11302 true scaffold_1: 5067000-5078301 Capsella rubella
Carub.0001s1430 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 5068302-5078301 Capsella rubella
Carub.0001s1430 10.0kb downstream 10.0kb downstream 11302 true scaffold_1: 5057000-5068301 Capsella rubella
Carub.0001s1430 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 5057000-5066999 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378530 5261 Brassicaceae View MSA
123836938 5264 Brassicales-Malvales View MSA
124322227 5266 SBM View MSA
124249111 5268 Malvidae View MSA
124068770 5270 Rosid View MSA
123752607 5271 Pentapetalae View MSA
122796741 5272 Eudicot View MSA
122051577 5273 Angiosperm View MSA
121351674 5274 Embryophyte View MSA
123426672 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain