Gene : Carub.0001s1516 C. rubella v1.1
Defline:  (1 of 29) PF05553 - Cotton fibre expressed protein (DUF761) Genomic Order:  1516
Name:  ? Carub.0001s1516 Secondary Identifier:  ? PAC:39228658
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s1516 0.5kb upstream 0.5kb upstream 728 true scaffold_1: 5364314-5365041 Capsella rubella
Carub.0001s1516 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 5364542-5365041 Capsella rubella
Carub.0001s1516 0.5kb downstream 0.5kb downstream 728 true scaffold_1: 5363814-5364541 Capsella rubella
Carub.0001s1516 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 5363814-5364313 Capsella rubella
Carub.0001s1516 1.0kb upstream 1.0kb upstream 1228 true scaffold_1: 5364314-5365541 Capsella rubella
Carub.0001s1516 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 5364542-5365541 Capsella rubella
Carub.0001s1516 1.0kb downstream 1.0kb downstream 1228 true scaffold_1: 5363314-5364541 Capsella rubella
Carub.0001s1516 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 5363314-5364313 Capsella rubella
Carub.0001s1516 2.0kb upstream 2.0kb upstream 2228 true scaffold_1: 5364314-5366541 Capsella rubella
Carub.0001s1516 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 5364542-5366541 Capsella rubella
Carub.0001s1516 2.0kb downstream 2.0kb downstream 2228 true scaffold_1: 5362314-5364541 Capsella rubella
Carub.0001s1516 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 5362314-5364313 Capsella rubella
Carub.0001s1516 5.0kb upstream 5.0kb upstream 5228 true scaffold_1: 5364314-5369541 Capsella rubella
Carub.0001s1516 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 5364542-5369541 Capsella rubella
Carub.0001s1516 5.0kb downstream 5.0kb downstream 5228 true scaffold_1: 5359314-5364541 Capsella rubella
Carub.0001s1516 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 5359314-5364313 Capsella rubella
Carub.0001s1516 10.0kb upstream 10.0kb upstream 10228 true scaffold_1: 5364314-5374541 Capsella rubella
Carub.0001s1516 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 5364542-5374541 Capsella rubella
Carub.0001s1516 10.0kb downstream 10.0kb downstream 10228 true scaffold_1: 5354314-5364541 Capsella rubella
Carub.0001s1516 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 5354314-5364313 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369122 5261 Brassicaceae View MSA
123840805 5264 Brassicales-Malvales View MSA
124348914 5266 SBM View MSA
124244692 5268 Malvidae View MSA
124069839 5270 Rosid View MSA
123746410 5271 Pentapetalae View MSA
122795069 5272 Eudicot View MSA
122048129 5273 Angiosperm View MSA
121310856 5274 Embryophyte View MSA
123348241 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain