Gene : Carub.0001s1527 C. rubella v1.1
Defline:  (1 of 11) PF01535//PF13812 - PPR repeat (PPR) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  1527
Name:  ? Carub.0001s1527 Secondary Identifier:  ? PAC:39227241
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s1527 0.5kb upstream 0.5kb upstream 3123 true scaffold_1: 5390502-5393624 Capsella rubella
Carub.0001s1527 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 5390502-5391001 Capsella rubella
Carub.0001s1527 0.5kb downstream 0.5kb downstream 3123 true scaffold_1: 5391002-5394124 Capsella rubella
Carub.0001s1527 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 5393625-5394124 Capsella rubella
Carub.0001s1527 1.0kb upstream 1.0kb upstream 3623 true scaffold_1: 5390002-5393624 Capsella rubella
Carub.0001s1527 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 5390002-5391001 Capsella rubella
Carub.0001s1527 1.0kb downstream 1.0kb downstream 3623 true scaffold_1: 5391002-5394624 Capsella rubella
Carub.0001s1527 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 5393625-5394624 Capsella rubella
Carub.0001s1527 2.0kb upstream 2.0kb upstream 4623 true scaffold_1: 5389002-5393624 Capsella rubella
Carub.0001s1527 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 5389002-5391001 Capsella rubella
Carub.0001s1527 2.0kb downstream 2.0kb downstream 4623 true scaffold_1: 5391002-5395624 Capsella rubella
Carub.0001s1527 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 5393625-5395624 Capsella rubella
Carub.0001s1527 5.0kb upstream 5.0kb upstream 7623 true scaffold_1: 5386002-5393624 Capsella rubella
Carub.0001s1527 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 5386002-5391001 Capsella rubella
Carub.0001s1527 5.0kb downstream 5.0kb downstream 7623 true scaffold_1: 5391002-5398624 Capsella rubella
Carub.0001s1527 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 5393625-5398624 Capsella rubella
Carub.0001s1527 10.0kb upstream 10.0kb upstream 12623 true scaffold_1: 5381002-5393624 Capsella rubella
Carub.0001s1527 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 5381002-5391001 Capsella rubella
Carub.0001s1527 10.0kb downstream 10.0kb downstream 12623 true scaffold_1: 5391002-5403624 Capsella rubella
Carub.0001s1527 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 5393625-5403624 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363716 5261 Brassicaceae View MSA
123838872 5264 Brassicales-Malvales View MSA
124337336 5266 SBM View MSA
124238154 5268 Malvidae View MSA
124068490 5270 Rosid View MSA
123736856 5271 Pentapetalae View MSA
122790484 5272 Eudicot View MSA
122044724 5273 Angiosperm View MSA
121351065 5274 Embryophyte View MSA
123381996 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain