Gene : Carub.0001s1100 C. rubella v1.1
Defline:  (1 of 8) 3.2.2.22 - rRNA N-glycosylase / rRNA N-glycosidase Genomic Order:  1100
Name:  ? Carub.0001s1100 Secondary Identifier:  ? PAC:39227024
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-1081 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s1100 0.5kb upstream 0.5kb upstream 2785 true scaffold_1: 3933899-3936683 Capsella rubella
Carub.0001s1100 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 3936184-3936683 Capsella rubella
Carub.0001s1100 0.5kb downstream 0.5kb downstream 2785 true scaffold_1: 3933399-3936183 Capsella rubella
Carub.0001s1100 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 3933399-3933898 Capsella rubella
Carub.0001s1100 1.0kb upstream 1.0kb upstream 3285 true scaffold_1: 3933899-3937183 Capsella rubella
Carub.0001s1100 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 3936184-3937183 Capsella rubella
Carub.0001s1100 1.0kb downstream 1.0kb downstream 3285 true scaffold_1: 3932899-3936183 Capsella rubella
Carub.0001s1100 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 3932899-3933898 Capsella rubella
Carub.0001s1100 2.0kb upstream 2.0kb upstream 4285 true scaffold_1: 3933899-3938183 Capsella rubella
Carub.0001s1100 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 3936184-3938183 Capsella rubella
Carub.0001s1100 2.0kb downstream 2.0kb downstream 4285 true scaffold_1: 3931899-3936183 Capsella rubella
Carub.0001s1100 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 3931899-3933898 Capsella rubella
Carub.0001s1100 5.0kb upstream 5.0kb upstream 7285 true scaffold_1: 3933899-3941183 Capsella rubella
Carub.0001s1100 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 3936184-3941183 Capsella rubella
Carub.0001s1100 5.0kb downstream 5.0kb downstream 7285 true scaffold_1: 3928899-3936183 Capsella rubella
Carub.0001s1100 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 3928899-3933898 Capsella rubella
Carub.0001s1100 10.0kb upstream 10.0kb upstream 12285 true scaffold_1: 3933899-3946183 Capsella rubella
Carub.0001s1100 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 3936184-3946183 Capsella rubella
Carub.0001s1100 10.0kb downstream 10.0kb downstream 12285 true scaffold_1: 3923899-3936183 Capsella rubella
Carub.0001s1100 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 3923899-3933898 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380325 5261 Brassicaceae View MSA
123802655 5264 Brassicales-Malvales View MSA
124349658 5266 SBM View MSA
124251807 5268 Malvidae View MSA
124073271 5270 Rosid View MSA
123752785 5271 Pentapetalae View MSA
122796250 5272 Eudicot View MSA
122050958 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain