Gene : Carub.0001s1341 C. rubella v1.1
Defline:  (1 of 1) PTHR13593:SF46 - F21F23.12 PROTEIN Genomic Order:  1341
Name:  ? Carub.0001s1341 Secondary Identifier:  ? PAC:39228862
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella LIPASYN-PWY Capsella rubella pathologic  
Crubella PWY-6351 Capsella rubella pathologic  
Crubella PWY-6367 Capsella rubella pathologic  
Crubella PWY-7039 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s1341 0.5kb upstream 0.5kb upstream 2551 true scaffold_1: 4777122-4779672 Capsella rubella
Carub.0001s1341 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 4777122-4777621 Capsella rubella
Carub.0001s1341 0.5kb downstream 0.5kb downstream 2551 true scaffold_1: 4777622-4780172 Capsella rubella
Carub.0001s1341 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 4779673-4780172 Capsella rubella
Carub.0001s1341 1.0kb upstream 1.0kb upstream 3051 true scaffold_1: 4776622-4779672 Capsella rubella
Carub.0001s1341 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 4776622-4777621 Capsella rubella
Carub.0001s1341 1.0kb downstream 1.0kb downstream 3051 true scaffold_1: 4777622-4780672 Capsella rubella
Carub.0001s1341 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 4779673-4780672 Capsella rubella
Carub.0001s1341 2.0kb upstream 2.0kb upstream 4051 true scaffold_1: 4775622-4779672 Capsella rubella
Carub.0001s1341 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 4775622-4777621 Capsella rubella
Carub.0001s1341 2.0kb downstream 2.0kb downstream 4051 true scaffold_1: 4777622-4781672 Capsella rubella
Carub.0001s1341 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 4779673-4781672 Capsella rubella
Carub.0001s1341 5.0kb upstream 5.0kb upstream 7051 true scaffold_1: 4772622-4779672 Capsella rubella
Carub.0001s1341 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 4772622-4777621 Capsella rubella
Carub.0001s1341 5.0kb downstream 5.0kb downstream 7051 true scaffold_1: 4777622-4784672 Capsella rubella
Carub.0001s1341 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 4779673-4784672 Capsella rubella
Carub.0001s1341 10.0kb upstream 10.0kb upstream 12051 true scaffold_1: 4767622-4779672 Capsella rubella
Carub.0001s1341 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 4767622-4777621 Capsella rubella
Carub.0001s1341 10.0kb downstream 10.0kb downstream 12051 true scaffold_1: 4777622-4789672 Capsella rubella
Carub.0001s1341 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 4779673-4789672 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376944 5261 Brassicaceae View MSA
123830201 5264 Brassicales-Malvales View MSA
124349669 5266 SBM View MSA
124247999 5268 Malvidae View MSA
124070438 5270 Rosid View MSA
123740952 5271 Pentapetalae View MSA
122794551 5272 Eudicot View MSA
122050722 5273 Angiosperm View MSA
121349197 5274 Embryophyte View MSA
123381212 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain