Gene : Carub.0001s1338 C. rubella v1.1
Defline:  (1 of 2) PTHR33914//PTHR33914:SF2 - FAMILY NOT NAMED // 18S PRE-RIBOSOMAL ASSEMBLY PROTEIN GAR2-RELATED PROTEIN Genomic Order:  1338
Name:  ? Carub.0001s1338 Secondary Identifier:  ? PAC:39229380
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s1338 0.5kb upstream 0.5kb upstream 1516 true scaffold_1: 4769031-4770546 Capsella rubella
Carub.0001s1338 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 4770047-4770546 Capsella rubella
Carub.0001s1338 0.5kb downstream 0.5kb downstream 1516 true scaffold_1: 4768531-4770046 Capsella rubella
Carub.0001s1338 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 4768531-4769030 Capsella rubella
Carub.0001s1338 1.0kb upstream 1.0kb upstream 2016 true scaffold_1: 4769031-4771046 Capsella rubella
Carub.0001s1338 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 4770047-4771046 Capsella rubella
Carub.0001s1338 1.0kb downstream 1.0kb downstream 2016 true scaffold_1: 4768031-4770046 Capsella rubella
Carub.0001s1338 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 4768031-4769030 Capsella rubella
Carub.0001s1338 2.0kb upstream 2.0kb upstream 3016 true scaffold_1: 4769031-4772046 Capsella rubella
Carub.0001s1338 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 4770047-4772046 Capsella rubella
Carub.0001s1338 2.0kb downstream 2.0kb downstream 3016 true scaffold_1: 4767031-4770046 Capsella rubella
Carub.0001s1338 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 4767031-4769030 Capsella rubella
Carub.0001s1338 5.0kb upstream 5.0kb upstream 6016 true scaffold_1: 4769031-4775046 Capsella rubella
Carub.0001s1338 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 4770047-4775046 Capsella rubella
Carub.0001s1338 5.0kb downstream 5.0kb downstream 6016 true scaffold_1: 4764031-4770046 Capsella rubella
Carub.0001s1338 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 4764031-4769030 Capsella rubella
Carub.0001s1338 10.0kb upstream 10.0kb upstream 11016 true scaffold_1: 4769031-4780046 Capsella rubella
Carub.0001s1338 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 4770047-4780046 Capsella rubella
Carub.0001s1338 10.0kb downstream 10.0kb downstream 11016 true scaffold_1: 4759031-4770046 Capsella rubella
Carub.0001s1338 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 4759031-4769030 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122335149 5261 Brassicaceae Singleton cluster - no MSA
123775932 5264 Brassicales-Malvales Singleton cluster - no MSA
124350703 5266 SBM View MSA
124253505 5268 Malvidae View MSA
124072821 5270 Rosid View MSA
123747257 5271 Pentapetalae View MSA
122794578 5272 Eudicot View MSA
122043601 5273 Angiosperm View MSA
121349006 5274 Embryophyte View MSA
123381122 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain