Gene : Carub.0001s1152 C. rubella v1.1
Defline:  (1 of 1) PTHR11778//PTHR11778:SF0 - SERYL-TRNA SYNTHETASE // SERINE--TRNA LIGASE, MITOCHONDRIAL Genomic Order:  1152
Name:  ? Carub.0001s1152 Secondary Identifier:  ? PAC:39228192
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella TRNA-CHARGING-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s1152 0.5kb upstream 0.5kb upstream 3310 true scaffold_1: 4099377-4102686 Capsella rubella
Carub.0001s1152 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 4099377-4099876 Capsella rubella
Carub.0001s1152 0.5kb downstream 0.5kb downstream 3310 true scaffold_1: 4099877-4103186 Capsella rubella
Carub.0001s1152 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 4102687-4103186 Capsella rubella
Carub.0001s1152 1.0kb upstream 1.0kb upstream 3810 true scaffold_1: 4098877-4102686 Capsella rubella
Carub.0001s1152 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 4098877-4099876 Capsella rubella
Carub.0001s1152 1.0kb downstream 1.0kb downstream 3810 true scaffold_1: 4099877-4103686 Capsella rubella
Carub.0001s1152 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 4102687-4103686 Capsella rubella
Carub.0001s1152 2.0kb upstream 2.0kb upstream 4810 true scaffold_1: 4097877-4102686 Capsella rubella
Carub.0001s1152 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 4097877-4099876 Capsella rubella
Carub.0001s1152 2.0kb downstream 2.0kb downstream 4810 true scaffold_1: 4099877-4104686 Capsella rubella
Carub.0001s1152 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 4102687-4104686 Capsella rubella
Carub.0001s1152 5.0kb upstream 5.0kb upstream 7810 true scaffold_1: 4094877-4102686 Capsella rubella
Carub.0001s1152 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 4094877-4099876 Capsella rubella
Carub.0001s1152 5.0kb downstream 5.0kb downstream 7810 true scaffold_1: 4099877-4107686 Capsella rubella
Carub.0001s1152 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 4102687-4107686 Capsella rubella
Carub.0001s1152 10.0kb upstream 10.0kb upstream 12810 true scaffold_1: 4089877-4102686 Capsella rubella
Carub.0001s1152 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 4089877-4099876 Capsella rubella
Carub.0001s1152 10.0kb downstream 10.0kb downstream 12810 true scaffold_1: 4099877-4112686 Capsella rubella
Carub.0001s1152 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 4102687-4112686 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379096 5261 Brassicaceae View MSA
123833233 5264 Brassicales-Malvales View MSA
124340826 5266 SBM View MSA
124238864 5268 Malvidae View MSA
124074907 5270 Rosid View MSA
123738384 5271 Pentapetalae View MSA
122793450 5272 Eudicot View MSA
122045874 5273 Angiosperm View MSA
121344249 5274 Embryophyte View MSA
123424928 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain