Gene : Carub.0001s0442 C. rubella v1.1
Defline:  (1 of 2) PTHR23083//PTHR23083:SF380 - TETRATRICOPEPTIDE REPEAT PROTEIN, TPR // SUBFAMILY NOT NAMED Genomic Order:  442
Name:  ? Carub.0001s0442 Secondary Identifier:  ? PAC:39231497
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s0442 0.5kb upstream 0.5kb upstream 2927 true scaffold_1: 1556391-1559317 Capsella rubella
Carub.0001s0442 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 1558818-1559317 Capsella rubella
Carub.0001s0442 0.5kb downstream 0.5kb downstream 2927 true scaffold_1: 1555891-1558817 Capsella rubella
Carub.0001s0442 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 1555891-1556390 Capsella rubella
Carub.0001s0442 1.0kb upstream 1.0kb upstream 3427 true scaffold_1: 1556391-1559817 Capsella rubella
Carub.0001s0442 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 1558818-1559817 Capsella rubella
Carub.0001s0442 1.0kb downstream 1.0kb downstream 3427 true scaffold_1: 1555391-1558817 Capsella rubella
Carub.0001s0442 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 1555391-1556390 Capsella rubella
Carub.0001s0442 2.0kb upstream 2.0kb upstream 4427 true scaffold_1: 1556391-1560817 Capsella rubella
Carub.0001s0442 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 1558818-1560817 Capsella rubella
Carub.0001s0442 2.0kb downstream 2.0kb downstream 4427 true scaffold_1: 1554391-1558817 Capsella rubella
Carub.0001s0442 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 1554391-1556390 Capsella rubella
Carub.0001s0442 5.0kb upstream 5.0kb upstream 7427 true scaffold_1: 1556391-1563817 Capsella rubella
Carub.0001s0442 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 1558818-1563817 Capsella rubella
Carub.0001s0442 5.0kb downstream 5.0kb downstream 7427 true scaffold_1: 1551391-1558817 Capsella rubella
Carub.0001s0442 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 1551391-1556390 Capsella rubella
Carub.0001s0442 10.0kb upstream 10.0kb upstream 12427 true scaffold_1: 1556391-1568817 Capsella rubella
Carub.0001s0442 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 1558818-1568817 Capsella rubella
Carub.0001s0442 10.0kb downstream 10.0kb downstream 12427 true scaffold_1: 1546391-1558817 Capsella rubella
Carub.0001s0442 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 1546391-1556390 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376265 5261 Brassicaceae View MSA
123837177 5264 Brassicales-Malvales View MSA
124340827 5266 SBM View MSA
124238713 5268 Malvidae View MSA
124068399 5270 Rosid View MSA
123739608 5271 Pentapetalae View MSA
122792397 5272 Eudicot View MSA
122043324 5273 Angiosperm View MSA
121346107 5274 Embryophyte View MSA
123380332 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain