Gene : Carub.0001s0455 C. rubella v1.1
Defline:  (1 of 2) PTHR31235:SF39 - PEROXIDASE 3-RELATED Genomic Order:  455
Name:  ? Carub.0001s0455 Secondary Identifier:  ? PAC:39230871
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5466 Capsella rubella pathologic  
Crubella PWY-7214 Capsella rubella pathologic  
Crubella PWY-7445 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s0455 0.5kb upstream 0.5kb upstream 2242 true scaffold_1: 1606872-1609113 Capsella rubella
Carub.0001s0455 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 1606872-1607371 Capsella rubella
Carub.0001s0455 0.5kb downstream 0.5kb downstream 2242 true scaffold_1: 1607372-1609613 Capsella rubella
Carub.0001s0455 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 1609114-1609613 Capsella rubella
Carub.0001s0455 1.0kb upstream 1.0kb upstream 2742 true scaffold_1: 1606372-1609113 Capsella rubella
Carub.0001s0455 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 1606372-1607371 Capsella rubella
Carub.0001s0455 1.0kb downstream 1.0kb downstream 2742 true scaffold_1: 1607372-1610113 Capsella rubella
Carub.0001s0455 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 1609114-1610113 Capsella rubella
Carub.0001s0455 2.0kb upstream 2.0kb upstream 3742 true scaffold_1: 1605372-1609113 Capsella rubella
Carub.0001s0455 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 1605372-1607371 Capsella rubella
Carub.0001s0455 2.0kb downstream 2.0kb downstream 3742 true scaffold_1: 1607372-1611113 Capsella rubella
Carub.0001s0455 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 1609114-1611113 Capsella rubella
Carub.0001s0455 5.0kb upstream 5.0kb upstream 6742 true scaffold_1: 1602372-1609113 Capsella rubella
Carub.0001s0455 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 1602372-1607371 Capsella rubella
Carub.0001s0455 5.0kb downstream 5.0kb downstream 6742 true scaffold_1: 1607372-1614113 Capsella rubella
Carub.0001s0455 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 1609114-1614113 Capsella rubella
Carub.0001s0455 10.0kb upstream 10.0kb upstream 11742 true scaffold_1: 1597372-1609113 Capsella rubella
Carub.0001s0455 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 1597372-1607371 Capsella rubella
Carub.0001s0455 10.0kb downstream 10.0kb downstream 11742 true scaffold_1: 1607372-1619113 Capsella rubella
Carub.0001s0455 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 1609114-1619113 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369858 5261 Brassicaceae View MSA
123838755 5264 Brassicales-Malvales View MSA
124341557 5266 SBM View MSA
124250593 5268 Malvidae View MSA
124071148 5270 Rosid View MSA
123748177 5271 Pentapetalae View MSA
122794454 5272 Eudicot View MSA
122051577 5273 Angiosperm View MSA
121351674 5274 Embryophyte View MSA
123426672 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain