Gene : Carub.0001s0488 C. rubella v1.1
Defline:  (1 of 2) PTHR12741:SF9 - CALLOSE SYNTHASE 1-RELATED Genomic Order:  488
Name:  ? Carub.0001s0488 Secondary Identifier:  ? PAC:39230156
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-6773 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s0488 0.5kb upstream 0.5kb upstream 12194 true scaffold_1: 1726556-1738749 Capsella rubella
Carub.0001s0488 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 1738250-1738749 Capsella rubella
Carub.0001s0488 0.5kb downstream 0.5kb downstream 12194 true scaffold_1: 1726056-1738249 Capsella rubella
Carub.0001s0488 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 1726056-1726555 Capsella rubella
Carub.0001s0488 1.0kb upstream 1.0kb upstream 12694 true scaffold_1: 1726556-1739249 Capsella rubella
Carub.0001s0488 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 1738250-1739249 Capsella rubella
Carub.0001s0488 1.0kb downstream 1.0kb downstream 12694 true scaffold_1: 1725556-1738249 Capsella rubella
Carub.0001s0488 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 1725556-1726555 Capsella rubella
Carub.0001s0488 2.0kb upstream 2.0kb upstream 13694 true scaffold_1: 1726556-1740249 Capsella rubella
Carub.0001s0488 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 1738250-1740249 Capsella rubella
Carub.0001s0488 2.0kb downstream 2.0kb downstream 13694 true scaffold_1: 1724556-1738249 Capsella rubella
Carub.0001s0488 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 1724556-1726555 Capsella rubella
Carub.0001s0488 5.0kb upstream 5.0kb upstream 16694 true scaffold_1: 1726556-1743249 Capsella rubella
Carub.0001s0488 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 1738250-1743249 Capsella rubella
Carub.0001s0488 5.0kb downstream 5.0kb downstream 16694 true scaffold_1: 1721556-1738249 Capsella rubella
Carub.0001s0488 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 1721556-1726555 Capsella rubella
Carub.0001s0488 10.0kb upstream 10.0kb upstream 21694 true scaffold_1: 1726556-1748249 Capsella rubella
Carub.0001s0488 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 1738250-1748249 Capsella rubella
Carub.0001s0488 10.0kb downstream 10.0kb downstream 21694 true scaffold_1: 1716556-1738249 Capsella rubella
Carub.0001s0488 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 1716556-1726555 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364153 5261 Brassicaceae View MSA
123798695 5264 Brassicales-Malvales View MSA
124346959 5266 SBM View MSA
124251802 5268 Malvidae View MSA
124072639 5270 Rosid View MSA
123745171 5271 Pentapetalae View MSA
122788947 5272 Eudicot View MSA
122050431 5273 Angiosperm View MSA
121349066 5274 Embryophyte View MSA
123428420 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain