Gene : Carub.0006s0542 C. rubella v1.1
Defline:  (1 of 5) PF01535//PF12854//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  542
Name:  ? Carub.0006s0542 Secondary Identifier:  ? PAC:39248017
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s0542 0.5kb upstream 0.5kb upstream 2369 true scaffold_6: 1989504-1991872 Capsella rubella
Carub.0006s0542 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 1991373-1991872 Capsella rubella
Carub.0006s0542 0.5kb downstream 0.5kb downstream 2369 true scaffold_6: 1989004-1991372 Capsella rubella
Carub.0006s0542 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 1989004-1989503 Capsella rubella
Carub.0006s0542 1.0kb upstream 1.0kb upstream 2869 true scaffold_6: 1989504-1992372 Capsella rubella
Carub.0006s0542 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 1991373-1992372 Capsella rubella
Carub.0006s0542 1.0kb downstream 1.0kb downstream 2869 true scaffold_6: 1988504-1991372 Capsella rubella
Carub.0006s0542 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 1988504-1989503 Capsella rubella
Carub.0006s0542 2.0kb upstream 2.0kb upstream 3869 true scaffold_6: 1989504-1993372 Capsella rubella
Carub.0006s0542 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 1991373-1993372 Capsella rubella
Carub.0006s0542 2.0kb downstream 2.0kb downstream 3869 true scaffold_6: 1987504-1991372 Capsella rubella
Carub.0006s0542 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 1987504-1989503 Capsella rubella
Carub.0006s0542 5.0kb upstream 5.0kb upstream 6869 true scaffold_6: 1989504-1996372 Capsella rubella
Carub.0006s0542 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 1991373-1996372 Capsella rubella
Carub.0006s0542 5.0kb downstream 5.0kb downstream 6869 true scaffold_6: 1984504-1991372 Capsella rubella
Carub.0006s0542 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 1984504-1989503 Capsella rubella
Carub.0006s0542 10.0kb upstream 10.0kb upstream 11869 true scaffold_6: 1989504-2001372 Capsella rubella
Carub.0006s0542 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 1991373-2001372 Capsella rubella
Carub.0006s0542 10.0kb downstream 10.0kb downstream 11869 true scaffold_6: 1979504-1991372 Capsella rubella
Carub.0006s0542 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 1979504-1989503 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369818 5261 Brassicaceae View MSA
123827807 5264 Brassicales-Malvales View MSA
124351259 5266 SBM View MSA
124252297 5268 Malvidae View MSA
124072628 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain