Gene : Carub.0006s0538 C. rubella v1.1
Defline:  (1 of 1) K02706 - photosystem II P680 reaction center D2 protein (psbD) Genomic Order:  538
Name:  ? Carub.0006s0538 Secondary Identifier:  ? PAC:39248745
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PHOTOALL-PWY Capsella rubella pathologic  
Crubella PWY-101 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s0538 0.5kb upstream 0.5kb upstream 2280 true scaffold_6: 1968719-1970998 Capsella rubella
Carub.0006s0538 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 1970499-1970998 Capsella rubella
Carub.0006s0538 0.5kb downstream 0.5kb downstream 2280 true scaffold_6: 1968219-1970498 Capsella rubella
Carub.0006s0538 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 1968219-1968718 Capsella rubella
Carub.0006s0538 1.0kb upstream 1.0kb upstream 2780 true scaffold_6: 1968719-1971498 Capsella rubella
Carub.0006s0538 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 1970499-1971498 Capsella rubella
Carub.0006s0538 1.0kb downstream 1.0kb downstream 2780 true scaffold_6: 1967719-1970498 Capsella rubella
Carub.0006s0538 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 1967719-1968718 Capsella rubella
Carub.0006s0538 2.0kb upstream 2.0kb upstream 3780 true scaffold_6: 1968719-1972498 Capsella rubella
Carub.0006s0538 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 1970499-1972498 Capsella rubella
Carub.0006s0538 2.0kb downstream 2.0kb downstream 3780 true scaffold_6: 1966719-1970498 Capsella rubella
Carub.0006s0538 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 1966719-1968718 Capsella rubella
Carub.0006s0538 5.0kb upstream 5.0kb upstream 6780 true scaffold_6: 1968719-1975498 Capsella rubella
Carub.0006s0538 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 1970499-1975498 Capsella rubella
Carub.0006s0538 5.0kb downstream 5.0kb downstream 6780 true scaffold_6: 1963719-1970498 Capsella rubella
Carub.0006s0538 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 1963719-1968718 Capsella rubella
Carub.0006s0538 10.0kb upstream 10.0kb upstream 11780 true scaffold_6: 1968719-1980498 Capsella rubella
Carub.0006s0538 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 1970499-1980498 Capsella rubella
Carub.0006s0538 10.0kb downstream 10.0kb downstream 11780 true scaffold_6: 1958719-1970498 Capsella rubella
Carub.0006s0538 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 1958719-1968718 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122338873 5261 Brassicaceae View MSA
123841499 5264 Brassicales-Malvales View MSA
124322948 5266 SBM View MSA
124254176 5268 Malvidae View MSA
124074858 5270 Rosid View MSA
123753555 5271 Pentapetalae View MSA
122797414 5272 Eudicot View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain