Gene : Carub.0008s1858 C. rubella v1.1
Defline:  (1 of 1) PTHR20902//PTHR20902:SF0 - 41-2 PROTEIN ANTIGEN-RELATED // TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 5 Genomic Order:  1858
Name:  ? Carub.0008s1858 Secondary Identifier:  ? PAC:39251592
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0008s1858 0.5kb upstream 0.5kb upstream 2268 true scaffold_8: 9665591-9667858 Capsella rubella
Carub.0008s1858 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 9667359-9667858 Capsella rubella
Carub.0008s1858 0.5kb downstream 0.5kb downstream 2268 true scaffold_8: 9665091-9667358 Capsella rubella
Carub.0008s1858 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 9665091-9665590 Capsella rubella
Carub.0008s1858 1.0kb upstream 1.0kb upstream 2768 true scaffold_8: 9665591-9668358 Capsella rubella
Carub.0008s1858 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 9667359-9668358 Capsella rubella
Carub.0008s1858 1.0kb downstream 1.0kb downstream 2768 true scaffold_8: 9664591-9667358 Capsella rubella
Carub.0008s1858 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 9664591-9665590 Capsella rubella
Carub.0008s1858 2.0kb upstream 2.0kb upstream 3768 true scaffold_8: 9665591-9669358 Capsella rubella
Carub.0008s1858 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 9667359-9669358 Capsella rubella
Carub.0008s1858 2.0kb downstream 2.0kb downstream 3768 true scaffold_8: 9663591-9667358 Capsella rubella
Carub.0008s1858 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 9663591-9665590 Capsella rubella
Carub.0008s1858 5.0kb upstream 5.0kb upstream 6768 true scaffold_8: 9665591-9672358 Capsella rubella
Carub.0008s1858 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 9667359-9672358 Capsella rubella
Carub.0008s1858 5.0kb downstream 5.0kb downstream 6768 true scaffold_8: 9660591-9667358 Capsella rubella
Carub.0008s1858 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 9660591-9665590 Capsella rubella
Carub.0008s1858 10.0kb upstream 10.0kb upstream 11768 true scaffold_8: 9665591-9677358 Capsella rubella
Carub.0008s1858 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 9667359-9677358 Capsella rubella
Carub.0008s1858 10.0kb downstream 10.0kb downstream 11768 true scaffold_8: 9655591-9667358 Capsella rubella
Carub.0008s1858 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 9655591-9665590 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367949 5261 Brassicaceae View MSA
123835113 5264 Brassicales-Malvales View MSA
124338888 5266 SBM View MSA
124241541 5268 Malvidae View MSA
124065767 5270 Rosid View MSA
123745459 5271 Pentapetalae View MSA
122785825 5272 Eudicot View MSA
122045467 5273 Angiosperm View MSA
121344565 5274 Embryophyte View MSA
123425941 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain