Gene : Carub.0008s1887 C. rubella v1.1
Defline:  (1 of 1) 1.1.1.82 - Malate dehydrogenase (NADP(+)) / NADP-linked malate dehydrogenase Genomic Order:  1887
Name:  ? Carub.0008s1887 Secondary Identifier:  ? PAC:39253126
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella GLUCONEO-PWY Capsella rubella pathologic  
Crubella PWY-241 Capsella rubella pathologic  
Crubella PWY-7117 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0008s1887 0.5kb upstream 0.5kb upstream 3145 true scaffold_8: 9763413-9766557 Capsella rubella
Carub.0008s1887 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 9766058-9766557 Capsella rubella
Carub.0008s1887 0.5kb downstream 0.5kb downstream 3145 true scaffold_8: 9762913-9766057 Capsella rubella
Carub.0008s1887 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 9762913-9763412 Capsella rubella
Carub.0008s1887 1.0kb upstream 1.0kb upstream 3645 true scaffold_8: 9763413-9767057 Capsella rubella
Carub.0008s1887 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 9766058-9767057 Capsella rubella
Carub.0008s1887 1.0kb downstream 1.0kb downstream 3645 true scaffold_8: 9762413-9766057 Capsella rubella
Carub.0008s1887 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 9762413-9763412 Capsella rubella
Carub.0008s1887 2.0kb upstream 2.0kb upstream 4645 true scaffold_8: 9763413-9768057 Capsella rubella
Carub.0008s1887 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 9766058-9768057 Capsella rubella
Carub.0008s1887 2.0kb downstream 2.0kb downstream 4645 true scaffold_8: 9761413-9766057 Capsella rubella
Carub.0008s1887 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 9761413-9763412 Capsella rubella
Carub.0008s1887 5.0kb upstream 5.0kb upstream 7645 true scaffold_8: 9763413-9771057 Capsella rubella
Carub.0008s1887 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 9766058-9771057 Capsella rubella
Carub.0008s1887 5.0kb downstream 5.0kb downstream 7645 true scaffold_8: 9758413-9766057 Capsella rubella
Carub.0008s1887 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 9758413-9763412 Capsella rubella
Carub.0008s1887 10.0kb upstream 10.0kb upstream 12645 true scaffold_8: 9763413-9776057 Capsella rubella
Carub.0008s1887 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 9766058-9776057 Capsella rubella
Carub.0008s1887 10.0kb downstream 10.0kb downstream 12645 true scaffold_8: 9753413-9766057 Capsella rubella
Carub.0008s1887 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 9753413-9763412 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373591 5261 Brassicaceae View MSA
123834055 5264 Brassicales-Malvales View MSA
124344297 5266 SBM View MSA
124238897 5268 Malvidae View MSA
124061971 5270 Rosid View MSA
123738843 5271 Pentapetalae View MSA
122785596 5272 Eudicot View MSA
122041880 5273 Angiosperm View MSA
121345837 5274 Embryophyte View MSA
123423785 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain