Gene : Carub.0008s1720 C. rubella v1.1
Defline:  (1 of 1) PTHR23382//PTHR23382:SF5 - MALATE DEHYDROGENASE // MALATE DEHYDROGENASE Genomic Order:  1720
Name:  ? Carub.0008s1720 Secondary Identifier:  ? PAC:39251353
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella GLUCONEO-PWY Capsella rubella pathologic  
Crubella GLYOXYLATE-BYPASS Capsella rubella pathologic  
Crubella PWY-5464 Capsella rubella pathologic  
Crubella PWY-561 Capsella rubella pathologic  
Crubella PWY-5690 Capsella rubella pathologic  
Crubella PWY66-399 Capsella rubella pathologic  
Crubella PWY-7115 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0008s1720 0.5kb upstream 0.5kb upstream 1728 true scaffold_8: 9090199-9091926 Capsella rubella
Carub.0008s1720 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 9090199-9090698 Capsella rubella
Carub.0008s1720 0.5kb downstream 0.5kb downstream 1728 true scaffold_8: 9090699-9092426 Capsella rubella
Carub.0008s1720 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 9091927-9092426 Capsella rubella
Carub.0008s1720 1.0kb upstream 1.0kb upstream 2228 true scaffold_8: 9089699-9091926 Capsella rubella
Carub.0008s1720 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 9089699-9090698 Capsella rubella
Carub.0008s1720 1.0kb downstream 1.0kb downstream 2228 true scaffold_8: 9090699-9092926 Capsella rubella
Carub.0008s1720 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 9091927-9092926 Capsella rubella
Carub.0008s1720 2.0kb upstream 2.0kb upstream 3228 true scaffold_8: 9088699-9091926 Capsella rubella
Carub.0008s1720 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 9088699-9090698 Capsella rubella
Carub.0008s1720 2.0kb downstream 2.0kb downstream 3228 true scaffold_8: 9090699-9093926 Capsella rubella
Carub.0008s1720 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 9091927-9093926 Capsella rubella
Carub.0008s1720 5.0kb upstream 5.0kb upstream 6228 true scaffold_8: 9085699-9091926 Capsella rubella
Carub.0008s1720 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 9085699-9090698 Capsella rubella
Carub.0008s1720 5.0kb downstream 5.0kb downstream 6228 true scaffold_8: 9090699-9096926 Capsella rubella
Carub.0008s1720 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 9091927-9096926 Capsella rubella
Carub.0008s1720 10.0kb upstream 10.0kb upstream 11228 true scaffold_8: 9080699-9091926 Capsella rubella
Carub.0008s1720 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 9080699-9090698 Capsella rubella
Carub.0008s1720 10.0kb downstream 10.0kb downstream 11228 true scaffold_8: 9090699-9101926 Capsella rubella
Carub.0008s1720 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 9091927-9101926 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361174 5261 Brassicaceae View MSA
123830714 5264 Brassicales-Malvales View MSA
124349239 5266 SBM View MSA
124248989 5268 Malvidae View MSA
124071542 5270 Rosid View MSA
123746984 5271 Pentapetalae View MSA
122786587 5272 Eudicot View MSA
122050336 5273 Angiosperm View MSA
121345674 5274 Embryophyte View MSA
123426378 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain