Gene : Carub.0008s2040 C. rubella v1.1
Defline:  (1 of 1) PTHR21327//PTHR21327:SF7 - GTP CYCLOHYDROLASE II-RELATED // MONOFUNCTIONAL RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBA 3, CHLOROPLASTIC Genomic Order:  2040
Name:  ? Carub.0008s2040 Secondary Identifier:  ? PAC:39250627
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella RIBOSYN2-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0008s2040 0.5kb upstream 0.5kb upstream 3499 true scaffold_8: 10294156-10297654 Capsella rubella
Carub.0008s2040 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 10294156-10294655 Capsella rubella
Carub.0008s2040 0.5kb downstream 0.5kb downstream 3499 true scaffold_8: 10294656-10298154 Capsella rubella
Carub.0008s2040 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 10297655-10298154 Capsella rubella
Carub.0008s2040 1.0kb upstream 1.0kb upstream 3999 true scaffold_8: 10293656-10297654 Capsella rubella
Carub.0008s2040 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 10293656-10294655 Capsella rubella
Carub.0008s2040 1.0kb downstream 1.0kb downstream 3999 true scaffold_8: 10294656-10298654 Capsella rubella
Carub.0008s2040 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 10297655-10298654 Capsella rubella
Carub.0008s2040 2.0kb upstream 2.0kb upstream 4999 true scaffold_8: 10292656-10297654 Capsella rubella
Carub.0008s2040 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 10292656-10294655 Capsella rubella
Carub.0008s2040 2.0kb downstream 2.0kb downstream 4999 true scaffold_8: 10294656-10299654 Capsella rubella
Carub.0008s2040 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 10297655-10299654 Capsella rubella
Carub.0008s2040 5.0kb upstream 5.0kb upstream 7999 true scaffold_8: 10289656-10297654 Capsella rubella
Carub.0008s2040 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 10289656-10294655 Capsella rubella
Carub.0008s2040 5.0kb downstream 5.0kb downstream 7999 true scaffold_8: 10294656-10302654 Capsella rubella
Carub.0008s2040 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 10297655-10302654 Capsella rubella
Carub.0008s2040 10.0kb upstream 10.0kb upstream 12999 true scaffold_8: 10284656-10297654 Capsella rubella
Carub.0008s2040 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 10284656-10294655 Capsella rubella
Carub.0008s2040 10.0kb downstream 10.0kb downstream 12999 true scaffold_8: 10294656-10307654 Capsella rubella
Carub.0008s2040 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 10297655-10307654 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374066 5261 Brassicaceae View MSA
123830516 5264 Brassicales-Malvales View MSA
124342854 5266 SBM View MSA
124241994 5268 Malvidae View MSA
124062618 5270 Rosid View MSA
123745495 5271 Pentapetalae View MSA
122786383 5272 Eudicot View MSA
122046960 5273 Angiosperm View MSA
121310676 5274 Embryophyte View MSA
123348102 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain