Gene : Carub.0008s2043 C. rubella v1.1
Defline:  (1 of 1) PTHR11035//PTHR11035:SF23 - PTPLA DOMAIN PROTEIN // PROTEIN R10E4.9 Genomic Order:  2043
Name:  ? Carub.0008s2043 Secondary Identifier:  ? PAC:39250859
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5080 Capsella rubella pathologic  
Crubella PWY-6433 Capsella rubella pathologic  
Crubella PWY-6598 Capsella rubella pathologic  
Crubella PWY-7036 Capsella rubella pathologic  
Crubella PWY-7601 Capsella rubella pathologic  
Crubella PWY-7606 Capsella rubella pathologic  
Crubella PWY-7619 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0008s2043 0.5kb upstream 0.5kb upstream 2480 true scaffold_8: 10303990-10306469 Capsella rubella
Carub.0008s2043 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 10305970-10306469 Capsella rubella
Carub.0008s2043 0.5kb downstream 0.5kb downstream 2480 true scaffold_8: 10303490-10305969 Capsella rubella
Carub.0008s2043 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 10303490-10303989 Capsella rubella
Carub.0008s2043 1.0kb upstream 1.0kb upstream 2980 true scaffold_8: 10303990-10306969 Capsella rubella
Carub.0008s2043 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 10305970-10306969 Capsella rubella
Carub.0008s2043 1.0kb downstream 1.0kb downstream 2980 true scaffold_8: 10302990-10305969 Capsella rubella
Carub.0008s2043 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 10302990-10303989 Capsella rubella
Carub.0008s2043 2.0kb upstream 2.0kb upstream 3980 true scaffold_8: 10303990-10307969 Capsella rubella
Carub.0008s2043 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 10305970-10307969 Capsella rubella
Carub.0008s2043 2.0kb downstream 2.0kb downstream 3980 true scaffold_8: 10301990-10305969 Capsella rubella
Carub.0008s2043 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 10301990-10303989 Capsella rubella
Carub.0008s2043 5.0kb upstream 5.0kb upstream 6980 true scaffold_8: 10303990-10310969 Capsella rubella
Carub.0008s2043 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 10305970-10310969 Capsella rubella
Carub.0008s2043 5.0kb downstream 5.0kb downstream 6980 true scaffold_8: 10298990-10305969 Capsella rubella
Carub.0008s2043 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 10298990-10303989 Capsella rubella
Carub.0008s2043 10.0kb upstream 10.0kb upstream 11980 true scaffold_8: 10303990-10315969 Capsella rubella
Carub.0008s2043 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 10305970-10315969 Capsella rubella
Carub.0008s2043 10.0kb downstream 10.0kb downstream 11980 true scaffold_8: 10293990-10305969 Capsella rubella
Carub.0008s2043 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 10293990-10303989 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367081 5261 Brassicaceae View MSA
123836753 5264 Brassicales-Malvales View MSA
124349665 5266 SBM View MSA
124243174 5268 Malvidae View MSA
124067090 5270 Rosid View MSA
123747996 5271 Pentapetalae View MSA
122792245 5272 Eudicot View MSA
122043901 5273 Angiosperm View MSA
121347400 5274 Embryophyte View MSA
123425989 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain