Gene : Carub.0008s1414 C. rubella v1.1
Defline:  (1 of 1) 4.2.1.109 - Methylthioribulose 1-phosphate dehydratase / 1-PMT-ribulose dehydratase Genomic Order:  1414
Name:  ? Carub.0008s1414 Secondary Identifier:  ? PAC:39250460
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-4361 Capsella rubella pathologic  
Crubella PWY-7270 Capsella rubella pathologic  
Crubella PWY-7528 Capsella rubella pathologic  

Genomics

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Expression

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Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0008s1414 0.5kb upstream 0.5kb upstream 4538 true scaffold_8: 7964263-7968800 Capsella rubella
Carub.0008s1414 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 7968301-7968800 Capsella rubella
Carub.0008s1414 0.5kb downstream 0.5kb downstream 4538 true scaffold_8: 7963763-7968300 Capsella rubella
Carub.0008s1414 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 7963763-7964262 Capsella rubella
Carub.0008s1414 1.0kb upstream 1.0kb upstream 5038 true scaffold_8: 7964263-7969300 Capsella rubella
Carub.0008s1414 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 7968301-7969300 Capsella rubella
Carub.0008s1414 1.0kb downstream 1.0kb downstream 5038 true scaffold_8: 7963263-7968300 Capsella rubella
Carub.0008s1414 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 7963263-7964262 Capsella rubella
Carub.0008s1414 2.0kb upstream 2.0kb upstream 6038 true scaffold_8: 7964263-7970300 Capsella rubella
Carub.0008s1414 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 7968301-7970300 Capsella rubella
Carub.0008s1414 2.0kb downstream 2.0kb downstream 6038 true scaffold_8: 7962263-7968300 Capsella rubella
Carub.0008s1414 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 7962263-7964262 Capsella rubella
Carub.0008s1414 5.0kb upstream 5.0kb upstream 9038 true scaffold_8: 7964263-7973300 Capsella rubella
Carub.0008s1414 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 7968301-7973300 Capsella rubella
Carub.0008s1414 5.0kb downstream 5.0kb downstream 9038 true scaffold_8: 7959263-7968300 Capsella rubella
Carub.0008s1414 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 7959263-7964262 Capsella rubella
Carub.0008s1414 10.0kb upstream 10.0kb upstream 14038 true scaffold_8: 7964263-7978300 Capsella rubella
Carub.0008s1414 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 7968301-7978300 Capsella rubella
Carub.0008s1414 10.0kb downstream 10.0kb downstream 14038 true scaffold_8: 7954263-7968300 Capsella rubella
Carub.0008s1414 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 7954263-7964262 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375301 5261 Brassicaceae View MSA
123832073 5264 Brassicales-Malvales View MSA
124339521 5266 SBM View MSA
124251861 5268 Malvidae View MSA
124067379 5270 Rosid View MSA
123736573 5271 Pentapetalae View MSA
122786615 5272 Eudicot View MSA
122042020 5273 Angiosperm View MSA
121345843 5274 Embryophyte View MSA
123425019 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain