Gene : Carub.0008s2097 C. rubella v1.1
Defline:  (1 of 2) 4.6.1.16 - tRNA-intron lyase / tRNA splicing endonuclease Genomic Order:  2097
Name:  ? Carub.0008s2097 Secondary Identifier:  ? PAC:39252009
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-6689 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0008s2097 0.5kb upstream 0.5kb upstream 1539 true scaffold_8: 10492918-10494456 Capsella rubella
Carub.0008s2097 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 10493957-10494456 Capsella rubella
Carub.0008s2097 0.5kb downstream 0.5kb downstream 1539 true scaffold_8: 10492418-10493956 Capsella rubella
Carub.0008s2097 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 10492418-10492917 Capsella rubella
Carub.0008s2097 1.0kb upstream 1.0kb upstream 2039 true scaffold_8: 10492918-10494956 Capsella rubella
Carub.0008s2097 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 10493957-10494956 Capsella rubella
Carub.0008s2097 1.0kb downstream 1.0kb downstream 2039 true scaffold_8: 10491918-10493956 Capsella rubella
Carub.0008s2097 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 10491918-10492917 Capsella rubella
Carub.0008s2097 2.0kb upstream 2.0kb upstream 3039 true scaffold_8: 10492918-10495956 Capsella rubella
Carub.0008s2097 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 10493957-10495956 Capsella rubella
Carub.0008s2097 2.0kb downstream 2.0kb downstream 3039 true scaffold_8: 10490918-10493956 Capsella rubella
Carub.0008s2097 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 10490918-10492917 Capsella rubella
Carub.0008s2097 5.0kb upstream 5.0kb upstream 6039 true scaffold_8: 10492918-10498956 Capsella rubella
Carub.0008s2097 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 10493957-10498956 Capsella rubella
Carub.0008s2097 5.0kb downstream 5.0kb downstream 6039 true scaffold_8: 10487918-10493956 Capsella rubella
Carub.0008s2097 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 10487918-10492917 Capsella rubella
Carub.0008s2097 10.0kb upstream 10.0kb upstream 11039 true scaffold_8: 10492918-10503956 Capsella rubella
Carub.0008s2097 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 10493957-10503956 Capsella rubella
Carub.0008s2097 10.0kb downstream 10.0kb downstream 11039 true scaffold_8: 10482918-10493956 Capsella rubella
Carub.0008s2097 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 10482918-10492917 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041240 5273 Angiosperm View MSA
122373562 5261 Brassicaceae View MSA
123840604 5264 Brassicales-Malvales View MSA
124346911 5266 SBM View MSA
124240586 5268 Malvidae View MSA
124064519 5270 Rosid View MSA
123739625 5271 Pentapetalae View MSA
122788641 5272 Eudicot View MSA
123429143 5275 Viridiplantae View MSA
121344093 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain