Gene : Carub.0006s0738 C. rubella v1.1
Defline:  (1 of 1) PTHR22835//PTHR22835:SF192 - ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  738
Name:  ? Carub.0006s0738 Secondary Identifier:  ? PAC:39246881
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella LIPAS-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s0738 0.5kb upstream 0.5kb upstream 2652 true scaffold_6: 2720791-2723442 Capsella rubella
Carub.0006s0738 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 2720791-2721290 Capsella rubella
Carub.0006s0738 0.5kb downstream 0.5kb downstream 2652 true scaffold_6: 2721291-2723942 Capsella rubella
Carub.0006s0738 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 2723443-2723942 Capsella rubella
Carub.0006s0738 1.0kb upstream 1.0kb upstream 3152 true scaffold_6: 2720291-2723442 Capsella rubella
Carub.0006s0738 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 2720291-2721290 Capsella rubella
Carub.0006s0738 1.0kb downstream 1.0kb downstream 3152 true scaffold_6: 2721291-2724442 Capsella rubella
Carub.0006s0738 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 2723443-2724442 Capsella rubella
Carub.0006s0738 2.0kb upstream 2.0kb upstream 4152 true scaffold_6: 2719291-2723442 Capsella rubella
Carub.0006s0738 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 2719291-2721290 Capsella rubella
Carub.0006s0738 2.0kb downstream 2.0kb downstream 4152 true scaffold_6: 2721291-2725442 Capsella rubella
Carub.0006s0738 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 2723443-2725442 Capsella rubella
Carub.0006s0738 5.0kb upstream 5.0kb upstream 7152 true scaffold_6: 2716291-2723442 Capsella rubella
Carub.0006s0738 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 2716291-2721290 Capsella rubella
Carub.0006s0738 5.0kb downstream 5.0kb downstream 7152 true scaffold_6: 2721291-2728442 Capsella rubella
Carub.0006s0738 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 2723443-2728442 Capsella rubella
Carub.0006s0738 10.0kb upstream 10.0kb upstream 12152 true scaffold_6: 2711291-2723442 Capsella rubella
Carub.0006s0738 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 2711291-2721290 Capsella rubella
Carub.0006s0738 10.0kb downstream 10.0kb downstream 12152 true scaffold_6: 2721291-2733442 Capsella rubella
Carub.0006s0738 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 2723443-2733442 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369061 5261 Brassicaceae View MSA
123836697 5264 Brassicales-Malvales View MSA
124346720 5266 SBM View MSA
124247249 5268 Malvidae View MSA
124069396 5270 Rosid View MSA
123753785 5271 Pentapetalae View MSA
122797352 5272 Eudicot View MSA
122051674 5273 Angiosperm View MSA
121351762 5274 Embryophyte View MSA
123428079 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain