Gene : Carub.0008s1355 C. rubella v1.1
Defline:  (1 of 2) PTHR31707:SF8 - PECTINESTERASE/PECTINESTERASE INHIBITOR 34-RELATED Genomic Order:  1355
Name:  ? Carub.0008s1355 Secondary Identifier:  ? PAC:39251010
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-1081 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0008s1355 0.5kb upstream 0.5kb upstream 2342 true scaffold_8: 7724460-7726801 Capsella rubella
Carub.0008s1355 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 7726302-7726801 Capsella rubella
Carub.0008s1355 0.5kb downstream 0.5kb downstream 2342 true scaffold_8: 7723960-7726301 Capsella rubella
Carub.0008s1355 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 7723960-7724459 Capsella rubella
Carub.0008s1355 1.0kb upstream 1.0kb upstream 2842 true scaffold_8: 7724460-7727301 Capsella rubella
Carub.0008s1355 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 7726302-7727301 Capsella rubella
Carub.0008s1355 1.0kb downstream 1.0kb downstream 2842 true scaffold_8: 7723460-7726301 Capsella rubella
Carub.0008s1355 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 7723460-7724459 Capsella rubella
Carub.0008s1355 2.0kb upstream 2.0kb upstream 3842 true scaffold_8: 7724460-7728301 Capsella rubella
Carub.0008s1355 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 7726302-7728301 Capsella rubella
Carub.0008s1355 2.0kb downstream 2.0kb downstream 3842 true scaffold_8: 7722460-7726301 Capsella rubella
Carub.0008s1355 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 7722460-7724459 Capsella rubella
Carub.0008s1355 5.0kb upstream 5.0kb upstream 6842 true scaffold_8: 7724460-7731301 Capsella rubella
Carub.0008s1355 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 7726302-7731301 Capsella rubella
Carub.0008s1355 5.0kb downstream 5.0kb downstream 6842 true scaffold_8: 7719460-7726301 Capsella rubella
Carub.0008s1355 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 7719460-7724459 Capsella rubella
Carub.0008s1355 10.0kb upstream 10.0kb upstream 11842 true scaffold_8: 7724460-7736301 Capsella rubella
Carub.0008s1355 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 7726302-7736301 Capsella rubella
Carub.0008s1355 10.0kb downstream 10.0kb downstream 11842 true scaffold_8: 7714460-7726301 Capsella rubella
Carub.0008s1355 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 7714460-7724459 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377390 5261 Brassicaceae View MSA
123838000 5264 Brassicales-Malvales View MSA
124337628 5266 SBM View MSA
124239188 5268 Malvidae View MSA
124065220 5270 Rosid View MSA
123746199 5271 Pentapetalae View MSA
122794152 5272 Eudicot View MSA
122043800 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain