Gene : Carub.0008s1753 C. rubella v1.1
Defline:  (1 of 1) 5.5.1.18 - Lycopene epsilon-cyclase Genomic Order:  1753
Name:  ? Carub.0008s1753 Secondary Identifier:  ? PAC:39250799
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella CAROTENOID-PWY Capsella rubella pathologic  
Crubella PWY-5175 Capsella rubella pathologic  
Crubella PWY-5946 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0008s1753 0.5kb upstream 0.5kb upstream 3538 true scaffold_8: 9235539-9239076 Capsella rubella
Carub.0008s1753 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 9235539-9236038 Capsella rubella
Carub.0008s1753 0.5kb downstream 0.5kb downstream 3538 true scaffold_8: 9236039-9239576 Capsella rubella
Carub.0008s1753 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 9239077-9239576 Capsella rubella
Carub.0008s1753 1.0kb upstream 1.0kb upstream 4038 true scaffold_8: 9235039-9239076 Capsella rubella
Carub.0008s1753 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 9235039-9236038 Capsella rubella
Carub.0008s1753 1.0kb downstream 1.0kb downstream 4038 true scaffold_8: 9236039-9240076 Capsella rubella
Carub.0008s1753 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 9239077-9240076 Capsella rubella
Carub.0008s1753 2.0kb upstream 2.0kb upstream 5038 true scaffold_8: 9234039-9239076 Capsella rubella
Carub.0008s1753 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 9234039-9236038 Capsella rubella
Carub.0008s1753 2.0kb downstream 2.0kb downstream 5038 true scaffold_8: 9236039-9241076 Capsella rubella
Carub.0008s1753 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 9239077-9241076 Capsella rubella
Carub.0008s1753 5.0kb upstream 5.0kb upstream 8038 true scaffold_8: 9231039-9239076 Capsella rubella
Carub.0008s1753 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 9231039-9236038 Capsella rubella
Carub.0008s1753 5.0kb downstream 5.0kb downstream 8038 true scaffold_8: 9236039-9244076 Capsella rubella
Carub.0008s1753 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 9239077-9244076 Capsella rubella
Carub.0008s1753 10.0kb upstream 10.0kb upstream 13038 true scaffold_8: 9226039-9239076 Capsella rubella
Carub.0008s1753 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 9226039-9236038 Capsella rubella
Carub.0008s1753 10.0kb downstream 10.0kb downstream 13038 true scaffold_8: 9236039-9249076 Capsella rubella
Carub.0008s1753 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 9239077-9249076 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379674 5261 Brassicaceae View MSA
123834922 5264 Brassicales-Malvales View MSA
124342530 5266 SBM View MSA
124243060 5268 Malvidae View MSA
124068333 5270 Rosid View MSA
123739919 5271 Pentapetalae View MSA
122791667 5272 Eudicot View MSA
122041543 5273 Angiosperm View MSA
121345455 5274 Embryophyte View MSA
123424108 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain