Gene : Carub.0008s1429 C. rubella v1.1
Defline:  (1 of 4) PTHR11926:SF326 - ANTHOCYANIDIN 3-O-GLUCOSIDE 2'''-O-XYLOSYLTRANSFERASE-RELATED Genomic Order:  1429
Name:  ? Carub.0008s1429 Secondary Identifier:  ? PAC:39251040
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7678 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0008s1429 0.5kb upstream 0.5kb upstream 1824 true scaffold_8: 8022817-8024640 Capsella rubella
Carub.0008s1429 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 8024141-8024640 Capsella rubella
Carub.0008s1429 0.5kb downstream 0.5kb downstream 1824 true scaffold_8: 8022317-8024140 Capsella rubella
Carub.0008s1429 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 8022317-8022816 Capsella rubella
Carub.0008s1429 1.0kb upstream 1.0kb upstream 2324 true scaffold_8: 8022817-8025140 Capsella rubella
Carub.0008s1429 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 8024141-8025140 Capsella rubella
Carub.0008s1429 1.0kb downstream 1.0kb downstream 2324 true scaffold_8: 8021817-8024140 Capsella rubella
Carub.0008s1429 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 8021817-8022816 Capsella rubella
Carub.0008s1429 2.0kb upstream 2.0kb upstream 3324 true scaffold_8: 8022817-8026140 Capsella rubella
Carub.0008s1429 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 8024141-8026140 Capsella rubella
Carub.0008s1429 2.0kb downstream 2.0kb downstream 3324 true scaffold_8: 8020817-8024140 Capsella rubella
Carub.0008s1429 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 8020817-8022816 Capsella rubella
Carub.0008s1429 5.0kb upstream 5.0kb upstream 6324 true scaffold_8: 8022817-8029140 Capsella rubella
Carub.0008s1429 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 8024141-8029140 Capsella rubella
Carub.0008s1429 5.0kb downstream 5.0kb downstream 6324 true scaffold_8: 8017817-8024140 Capsella rubella
Carub.0008s1429 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 8017817-8022816 Capsella rubella
Carub.0008s1429 10.0kb upstream 10.0kb upstream 11324 true scaffold_8: 8022817-8034140 Capsella rubella
Carub.0008s1429 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 8024141-8034140 Capsella rubella
Carub.0008s1429 10.0kb downstream 10.0kb downstream 11324 true scaffold_8: 8012817-8024140 Capsella rubella
Carub.0008s1429 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 8012817-8022816 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379165 5261 Brassicaceae View MSA
123839739 5264 Brassicales-Malvales View MSA
124346901 5266 SBM View MSA
124241012 5268 Malvidae View MSA
124064648 5270 Rosid View MSA
123753607 5271 Pentapetalae View MSA
122797779 5272 Eudicot View MSA
122051696 5273 Angiosperm View MSA
121351097 5274 Embryophyte View MSA
123428681 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain