Gene : Carub.0230s0002 C. rubella v1.1

Defline:  (1 of 11) PTHR33830//PTHR33830:SF3 - FAMILY NOT NAMED // DEFENSIN-LIKE PROTEIN 122-RELATED Genomic Order:  2
Name:  ? Carub.0230s0002 Secondary Identifier:  ? PAC:39250058

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0230s0002 0.5kb upstream 0.5kb upstream 854 true scaffold_230: 3733-4586 Capsella rubella
Carub.0230s0002 0.5kb upstream 0.5kb upstream 500 false scaffold_230: 3733-4232 Capsella rubella
Carub.0230s0002 0.5kb downstream 0.5kb downstream 854 true scaffold_230: 4233-5086 Capsella rubella
Carub.0230s0002 0.5kb downstream 0.5kb downstream 500 false scaffold_230: 4587-5086 Capsella rubella
Carub.0230s0002 1.0kb upstream 1.0kb upstream 1354 true scaffold_230: 3233-4586 Capsella rubella
Carub.0230s0002 1.0kb upstream 1.0kb upstream 1000 false scaffold_230: 3233-4232 Capsella rubella
Carub.0230s0002 1.0kb downstream 1.0kb downstream 1354 true scaffold_230: 4233-5586 Capsella rubella
Carub.0230s0002 1.0kb downstream 1.0kb downstream 1000 false scaffold_230: 4587-5586 Capsella rubella
Carub.0230s0002 2.0kb upstream 2.0kb upstream 2354 true scaffold_230: 2233-4586 Capsella rubella
Carub.0230s0002 2.0kb upstream 2.0kb upstream 2000 false scaffold_230: 2233-4232 Capsella rubella
Carub.0230s0002 2.0kb downstream 2.0kb downstream 2049 true scaffold_230: 4233-6281 Capsella rubella
Carub.0230s0002 2.0kb downstream 2.0kb downstream 1695 false scaffold_230: 4587-6281 Capsella rubella
Carub.0230s0002 5.0kb upstream 5.0kb upstream 4586 true scaffold_230: 1-4586 Capsella rubella
Carub.0230s0002 5.0kb upstream 5.0kb upstream 4232 false scaffold_230: 1-4232 Capsella rubella
Carub.0230s0002 5.0kb downstream 5.0kb downstream 2049 true scaffold_230: 4233-6281 Capsella rubella
Carub.0230s0002 5.0kb downstream 5.0kb downstream 1695 false scaffold_230: 4587-6281 Capsella rubella
Carub.0230s0002 10.0kb upstream 10.0kb upstream 4586 true scaffold_230: 1-4586 Capsella rubella
Carub.0230s0002 10.0kb upstream 10.0kb upstream 4232 false scaffold_230: 1-4232 Capsella rubella
Carub.0230s0002 10.0kb downstream 10.0kb downstream 2049 true scaffold_230: 4233-6281 Capsella rubella
Carub.0230s0002 10.0kb downstream 10.0kb downstream 1695 false scaffold_230: 4587-6281 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121792133 5273 Angiosperm View MSA
122370998 5261 Brassicaceae View MSA
123841000 5264 Brassicales-Malvales View MSA
124322820 5266 SBM View MSA
124251397 5268 Malvidae View MSA
124067401 5270 Rosid View MSA
123743891 5271 Pentapetalae View MSA
122796538 5272 Eudicot View MSA
121063384 5274 Embryophyte View MSA
123103137 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain