Gene : Carub.0004s0164 C. rubella v1.1
Defline:  (1 of 1) PTHR13697//PTHR13697:SF20 - PHOSPHOFRUCTOKINASE // SUBFAMILY NOT NAMED Genomic Order:  164
Name:  ? Carub.0004s0164 Secondary Identifier:  ? PAC:39237030
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella ANAEROFRUCAT-PWY Capsella rubella pathologic  
Crubella ANAGLYCOLYSIS-PWY Capsella rubella pathologic  
Crubella PWY-1042 Capsella rubella pathologic  
Crubella PWY-5464 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s0164 0.5kb upstream 0.5kb upstream 3562 true scaffold_4: 616723-620284 Capsella rubella
Carub.0004s0164 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 616723-617222 Capsella rubella
Carub.0004s0164 0.5kb downstream 0.5kb downstream 3562 true scaffold_4: 617223-620784 Capsella rubella
Carub.0004s0164 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 620285-620784 Capsella rubella
Carub.0004s0164 1.0kb upstream 1.0kb upstream 4062 true scaffold_4: 616223-620284 Capsella rubella
Carub.0004s0164 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 616223-617222 Capsella rubella
Carub.0004s0164 1.0kb downstream 1.0kb downstream 4062 true scaffold_4: 617223-621284 Capsella rubella
Carub.0004s0164 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 620285-621284 Capsella rubella
Carub.0004s0164 2.0kb upstream 2.0kb upstream 5062 true scaffold_4: 615223-620284 Capsella rubella
Carub.0004s0164 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 615223-617222 Capsella rubella
Carub.0004s0164 2.0kb downstream 2.0kb downstream 5062 true scaffold_4: 617223-622284 Capsella rubella
Carub.0004s0164 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 620285-622284 Capsella rubella
Carub.0004s0164 5.0kb upstream 5.0kb upstream 8062 true scaffold_4: 612223-620284 Capsella rubella
Carub.0004s0164 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 612223-617222 Capsella rubella
Carub.0004s0164 5.0kb downstream 5.0kb downstream 8062 true scaffold_4: 617223-625284 Capsella rubella
Carub.0004s0164 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 620285-625284 Capsella rubella
Carub.0004s0164 10.0kb upstream 10.0kb upstream 13062 true scaffold_4: 607223-620284 Capsella rubella
Carub.0004s0164 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 607223-617222 Capsella rubella
Carub.0004s0164 10.0kb downstream 10.0kb downstream 13062 true scaffold_4: 617223-630284 Capsella rubella
Carub.0004s0164 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 620285-630284 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375499 5261 Brassicaceae View MSA
123831000 5264 Brassicales-Malvales View MSA
124339627 5266 SBM View MSA
124240075 5268 Malvidae View MSA
124074874 5270 Rosid View MSA
123750094 5271 Pentapetalae View MSA
122793995 5272 Eudicot View MSA
122043440 5273 Angiosperm View MSA
121347937 5274 Embryophyte View MSA
123424464 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain