Gene : Carub.0004s0173 C. rubella v1.1
Defline:  (1 of 1) PTHR11080:SF32 - EXPRESSED PROTEIN Genomic Order:  173
Name:  ? Carub.0004s0173 Secondary Identifier:  ? PAC:39238777
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5381 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s0173 0.5kb upstream 0.5kb upstream 1891 true scaffold_4: 664576-666466 Capsella rubella
Carub.0004s0173 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 665967-666466 Capsella rubella
Carub.0004s0173 0.5kb downstream 0.5kb downstream 1891 true scaffold_4: 664076-665966 Capsella rubella
Carub.0004s0173 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 664076-664575 Capsella rubella
Carub.0004s0173 1.0kb upstream 1.0kb upstream 2391 true scaffold_4: 664576-666966 Capsella rubella
Carub.0004s0173 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 665967-666966 Capsella rubella
Carub.0004s0173 1.0kb downstream 1.0kb downstream 2391 true scaffold_4: 663576-665966 Capsella rubella
Carub.0004s0173 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 663576-664575 Capsella rubella
Carub.0004s0173 2.0kb upstream 2.0kb upstream 3391 true scaffold_4: 664576-667966 Capsella rubella
Carub.0004s0173 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 665967-667966 Capsella rubella
Carub.0004s0173 2.0kb downstream 2.0kb downstream 3391 true scaffold_4: 662576-665966 Capsella rubella
Carub.0004s0173 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 662576-664575 Capsella rubella
Carub.0004s0173 5.0kb upstream 5.0kb upstream 6391 true scaffold_4: 664576-670966 Capsella rubella
Carub.0004s0173 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 665967-670966 Capsella rubella
Carub.0004s0173 5.0kb downstream 5.0kb downstream 6391 true scaffold_4: 659576-665966 Capsella rubella
Carub.0004s0173 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 659576-664575 Capsella rubella
Carub.0004s0173 10.0kb upstream 10.0kb upstream 11391 true scaffold_4: 664576-675966 Capsella rubella
Carub.0004s0173 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 665967-675966 Capsella rubella
Carub.0004s0173 10.0kb downstream 10.0kb downstream 11391 true scaffold_4: 654576-665966 Capsella rubella
Carub.0004s0173 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 654576-664575 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372652 5261 Brassicaceae View MSA
123827834 5264 Brassicales-Malvales View MSA
124345682 5266 SBM View MSA
124246513 5268 Malvidae View MSA
124070936 5270 Rosid View MSA
123750859 5271 Pentapetalae View MSA
122789045 5272 Eudicot View MSA
122045390 5273 Angiosperm View MSA
121345440 5274 Embryophyte View MSA
123380217 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain