Gene : Carub.0008s2794 C. rubella v1.1
Defline:  (1 of 2) K02716 - photosystem II oxygen-evolving enhancer protein 1 (psbO) Genomic Order:  2794
Name:  ? Carub.0008s2794 Secondary Identifier:  ? PAC:39253002
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PHOTOALL-PWY Capsella rubella pathologic  
Crubella PWY-101 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0008s2794 0.5kb upstream 0.5kb upstream 2013 true scaffold_8: 13136831-13138843 Capsella rubella
Carub.0008s2794 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 13138344-13138843 Capsella rubella
Carub.0008s2794 0.5kb downstream 0.5kb downstream 2013 true scaffold_8: 13136331-13138343 Capsella rubella
Carub.0008s2794 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 13136331-13136830 Capsella rubella
Carub.0008s2794 1.0kb upstream 1.0kb upstream 2513 true scaffold_8: 13136831-13139343 Capsella rubella
Carub.0008s2794 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 13138344-13139343 Capsella rubella
Carub.0008s2794 1.0kb downstream 1.0kb downstream 2513 true scaffold_8: 13135831-13138343 Capsella rubella
Carub.0008s2794 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 13135831-13136830 Capsella rubella
Carub.0008s2794 2.0kb upstream 2.0kb upstream 3513 true scaffold_8: 13136831-13140343 Capsella rubella
Carub.0008s2794 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 13138344-13140343 Capsella rubella
Carub.0008s2794 2.0kb downstream 2.0kb downstream 3513 true scaffold_8: 13134831-13138343 Capsella rubella
Carub.0008s2794 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 13134831-13136830 Capsella rubella
Carub.0008s2794 5.0kb upstream 5.0kb upstream 6513 true scaffold_8: 13136831-13143343 Capsella rubella
Carub.0008s2794 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 13138344-13143343 Capsella rubella
Carub.0008s2794 5.0kb downstream 5.0kb downstream 6513 true scaffold_8: 13131831-13138343 Capsella rubella
Carub.0008s2794 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 13131831-13136830 Capsella rubella
Carub.0008s2794 10.0kb upstream 10.0kb upstream 11513 true scaffold_8: 13136831-13148343 Capsella rubella
Carub.0008s2794 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 13138344-13148343 Capsella rubella
Carub.0008s2794 10.0kb downstream 10.0kb downstream 11513 true scaffold_8: 13126831-13138343 Capsella rubella
Carub.0008s2794 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 13126831-13136830 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364406 5261 Brassicaceae View MSA
123840363 5264 Brassicales-Malvales View MSA
124341777 5266 SBM View MSA
124237212 5268 Malvidae View MSA
124063467 5270 Rosid View MSA
123739417 5271 Pentapetalae View MSA
122788254 5272 Eudicot View MSA
122047967 5273 Angiosperm View MSA
121344212 5274 Embryophyte View MSA
123425295 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain