Gene : Carub.0008s2736 C. rubella v1.1
Defline:  (1 of 16) 2.3.1.133 - Shikimate O-hydroxycinnamoyltransferase Genomic Order:  2736
Name:  ? Carub.0008s2736 Secondary Identifier:  ? PAC:39252263
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-361 Capsella rubella pathologic  
Crubella PWY-6039 Capsella rubella pathologic  
Crubella PWY-6040 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0008s2736 0.5kb upstream 0.5kb upstream 2011 true scaffold_8: 12925579-12927589 Capsella rubella
Carub.0008s2736 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 12925579-12926078 Capsella rubella
Carub.0008s2736 0.5kb downstream 0.5kb downstream 2011 true scaffold_8: 12926079-12928089 Capsella rubella
Carub.0008s2736 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 12927590-12928089 Capsella rubella
Carub.0008s2736 1.0kb upstream 1.0kb upstream 2511 true scaffold_8: 12925079-12927589 Capsella rubella
Carub.0008s2736 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 12925079-12926078 Capsella rubella
Carub.0008s2736 1.0kb downstream 1.0kb downstream 2511 true scaffold_8: 12926079-12928589 Capsella rubella
Carub.0008s2736 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 12927590-12928589 Capsella rubella
Carub.0008s2736 2.0kb upstream 2.0kb upstream 3511 true scaffold_8: 12924079-12927589 Capsella rubella
Carub.0008s2736 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 12924079-12926078 Capsella rubella
Carub.0008s2736 2.0kb downstream 2.0kb downstream 3511 true scaffold_8: 12926079-12929589 Capsella rubella
Carub.0008s2736 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 12927590-12929589 Capsella rubella
Carub.0008s2736 5.0kb upstream 5.0kb upstream 6511 true scaffold_8: 12921079-12927589 Capsella rubella
Carub.0008s2736 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 12921079-12926078 Capsella rubella
Carub.0008s2736 5.0kb downstream 5.0kb downstream 6511 true scaffold_8: 12926079-12932589 Capsella rubella
Carub.0008s2736 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 12927590-12932589 Capsella rubella
Carub.0008s2736 10.0kb upstream 10.0kb upstream 11511 true scaffold_8: 12916079-12927589 Capsella rubella
Carub.0008s2736 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 12916079-12926078 Capsella rubella
Carub.0008s2736 10.0kb downstream 10.0kb downstream 11511 true scaffold_8: 12926079-12937589 Capsella rubella
Carub.0008s2736 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 12927590-12937589 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373885 5261 Brassicaceae View MSA
123841407 5264 Brassicales-Malvales View MSA
124349927 5266 SBM View MSA
124250776 5268 Malvidae View MSA
124061050 5270 Rosid View MSA
123747860 5271 Pentapetalae View MSA
122791254 5272 Eudicot View MSA
122051643 5273 Angiosperm View MSA
121350983 5274 Embryophyte View MSA
123428782 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain