Gene : Carub.0008s2483 C. rubella v1.1
Defline:  (1 of 3) K01885 - glutamyl-tRNA synthetase (EARS, gltX) Genomic Order:  2483
Name:  ? Carub.0008s2483 Secondary Identifier:  ? PAC:39251667
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5188 Capsella rubella pathologic  
Crubella PWY-5918 Capsella rubella pathologic  
Crubella TRNA-CHARGING-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0008s2483 0.5kb upstream 0.5kb upstream 3741 true scaffold_8: 11994061-11997801 Capsella rubella
Carub.0008s2483 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 11997302-11997801 Capsella rubella
Carub.0008s2483 0.5kb downstream 0.5kb downstream 3741 true scaffold_8: 11993561-11997301 Capsella rubella
Carub.0008s2483 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 11993561-11994060 Capsella rubella
Carub.0008s2483 1.0kb upstream 1.0kb upstream 4241 true scaffold_8: 11994061-11998301 Capsella rubella
Carub.0008s2483 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 11997302-11998301 Capsella rubella
Carub.0008s2483 1.0kb downstream 1.0kb downstream 4241 true scaffold_8: 11993061-11997301 Capsella rubella
Carub.0008s2483 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 11993061-11994060 Capsella rubella
Carub.0008s2483 2.0kb upstream 2.0kb upstream 5241 true scaffold_8: 11994061-11999301 Capsella rubella
Carub.0008s2483 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 11997302-11999301 Capsella rubella
Carub.0008s2483 2.0kb downstream 2.0kb downstream 5241 true scaffold_8: 11992061-11997301 Capsella rubella
Carub.0008s2483 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 11992061-11994060 Capsella rubella
Carub.0008s2483 5.0kb upstream 5.0kb upstream 8241 true scaffold_8: 11994061-12002301 Capsella rubella
Carub.0008s2483 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 11997302-12002301 Capsella rubella
Carub.0008s2483 5.0kb downstream 5.0kb downstream 8241 true scaffold_8: 11989061-11997301 Capsella rubella
Carub.0008s2483 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 11989061-11994060 Capsella rubella
Carub.0008s2483 10.0kb upstream 10.0kb upstream 13241 true scaffold_8: 11994061-12007301 Capsella rubella
Carub.0008s2483 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 11997302-12007301 Capsella rubella
Carub.0008s2483 10.0kb downstream 10.0kb downstream 13241 true scaffold_8: 11984061-11997301 Capsella rubella
Carub.0008s2483 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 11984061-11994060 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368604 5261 Brassicaceae View MSA
123832530 5264 Brassicales-Malvales View MSA
124344288 5266 SBM View MSA
124238938 5268 Malvidae View MSA
124063360 5270 Rosid View MSA
123737264 5271 Pentapetalae View MSA
122787973 5272 Eudicot View MSA
122041760 5273 Angiosperm View MSA
121345245 5274 Embryophyte View MSA
123424323 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain