Gene : Carub.0008s2509 C. rubella v1.1
Defline:  (1 of 1) 3.5.4.25//4.1.99.12 - GTP cyclohydrolase II // 3,4-dihydroxy-2-butanone-4-phosphate synthase / L-3,4-dihydroxybutan-2-one-4-phosphate synthase Genomic Order:  2509
Name:  ? Carub.0008s2509 Secondary Identifier:  ? PAC:39252140
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella RIBOSYN2-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0008s2509 0.5kb upstream 0.5kb upstream 3424 true scaffold_8: 12084719-12088142 Capsella rubella
Carub.0008s2509 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 12084719-12085218 Capsella rubella
Carub.0008s2509 0.5kb downstream 0.5kb downstream 3424 true scaffold_8: 12085219-12088642 Capsella rubella
Carub.0008s2509 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 12088143-12088642 Capsella rubella
Carub.0008s2509 1.0kb upstream 1.0kb upstream 3924 true scaffold_8: 12084219-12088142 Capsella rubella
Carub.0008s2509 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 12084219-12085218 Capsella rubella
Carub.0008s2509 1.0kb downstream 1.0kb downstream 3924 true scaffold_8: 12085219-12089142 Capsella rubella
Carub.0008s2509 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 12088143-12089142 Capsella rubella
Carub.0008s2509 2.0kb upstream 2.0kb upstream 4924 true scaffold_8: 12083219-12088142 Capsella rubella
Carub.0008s2509 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 12083219-12085218 Capsella rubella
Carub.0008s2509 2.0kb downstream 2.0kb downstream 4924 true scaffold_8: 12085219-12090142 Capsella rubella
Carub.0008s2509 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 12088143-12090142 Capsella rubella
Carub.0008s2509 5.0kb upstream 5.0kb upstream 7924 true scaffold_8: 12080219-12088142 Capsella rubella
Carub.0008s2509 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 12080219-12085218 Capsella rubella
Carub.0008s2509 5.0kb downstream 5.0kb downstream 7924 true scaffold_8: 12085219-12093142 Capsella rubella
Carub.0008s2509 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 12088143-12093142 Capsella rubella
Carub.0008s2509 10.0kb upstream 10.0kb upstream 12924 true scaffold_8: 12075219-12088142 Capsella rubella
Carub.0008s2509 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 12075219-12085218 Capsella rubella
Carub.0008s2509 10.0kb downstream 10.0kb downstream 12924 true scaffold_8: 12085219-12098142 Capsella rubella
Carub.0008s2509 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 12088143-12098142 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041066 5273 Angiosperm View MSA
122374367 5261 Brassicaceae View MSA
123828397 5264 Brassicales-Malvales View MSA
124340987 5266 SBM View MSA
124248360 5268 Malvidae View MSA
124067680 5270 Rosid View MSA
123753464 5271 Pentapetalae View MSA
122788466 5272 Eudicot View MSA
121346573 5274 Embryophyte View MSA
123428678 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain