Gene : Carub.0008s2538 C. rubella v1.1
Defline:  (1 of 1) PTHR23076//PTHR23076:SF49 - METALLOPROTEASE M41 FTSH // AAA-TYPE ATPASE FAMILY PROTEIN Genomic Order:  2538
Name:  ? Carub.0008s2538 Secondary Identifier:  ? PAC:39251546
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0008s2538 0.5kb upstream 0.5kb upstream 5220 true scaffold_8: 12191621-12196840 Capsella rubella
Carub.0008s2538 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 12196341-12196840 Capsella rubella
Carub.0008s2538 0.5kb downstream 0.5kb downstream 5220 true scaffold_8: 12191121-12196340 Capsella rubella
Carub.0008s2538 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 12191121-12191620 Capsella rubella
Carub.0008s2538 1.0kb upstream 1.0kb upstream 5720 true scaffold_8: 12191621-12197340 Capsella rubella
Carub.0008s2538 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 12196341-12197340 Capsella rubella
Carub.0008s2538 1.0kb downstream 1.0kb downstream 5720 true scaffold_8: 12190621-12196340 Capsella rubella
Carub.0008s2538 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 12190621-12191620 Capsella rubella
Carub.0008s2538 2.0kb upstream 2.0kb upstream 6720 true scaffold_8: 12191621-12198340 Capsella rubella
Carub.0008s2538 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 12196341-12198340 Capsella rubella
Carub.0008s2538 2.0kb downstream 2.0kb downstream 6720 true scaffold_8: 12189621-12196340 Capsella rubella
Carub.0008s2538 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 12189621-12191620 Capsella rubella
Carub.0008s2538 5.0kb upstream 5.0kb upstream 9720 true scaffold_8: 12191621-12201340 Capsella rubella
Carub.0008s2538 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 12196341-12201340 Capsella rubella
Carub.0008s2538 5.0kb downstream 5.0kb downstream 9720 true scaffold_8: 12186621-12196340 Capsella rubella
Carub.0008s2538 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 12186621-12191620 Capsella rubella
Carub.0008s2538 10.0kb upstream 10.0kb upstream 14720 true scaffold_8: 12191621-12206340 Capsella rubella
Carub.0008s2538 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 12196341-12206340 Capsella rubella
Carub.0008s2538 10.0kb downstream 10.0kb downstream 14720 true scaffold_8: 12181621-12196340 Capsella rubella
Carub.0008s2538 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 12181621-12191620 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361326 5261 Brassicaceae View MSA
123829147 5264 Brassicales-Malvales View MSA
124340816 5266 SBM View MSA
124240643 5268 Malvidae View MSA
124066007 5270 Rosid View MSA
123738416 5271 Pentapetalae View MSA
122790727 5272 Eudicot View MSA
122043853 5273 Angiosperm View MSA
121345104 5274 Embryophyte View MSA
123380156 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain