Gene : Carub.0002s2585 C. rubella v1.1
Defline:  (1 of 1) PTHR31642//PTHR31642:SF6 - FAMILY NOT NAMED // HXXXD-TYPE ACYL-TRANSFERASE-RELATED Genomic Order:  2585
Name:  ? Carub.0002s2585 Secondary Identifier:  ? PAC:39243553
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-4203 Capsella rubella pathologic  
Crubella PWY-5835 Capsella rubella pathologic  
Crubella PWY-6801 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0002s2585 0.5kb upstream 0.5kb upstream 2008 true scaffold_2: 13375140-13377147 Capsella rubella
Carub.0002s2585 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 13376648-13377147 Capsella rubella
Carub.0002s2585 0.5kb downstream 0.5kb downstream 2008 true scaffold_2: 13374640-13376647 Capsella rubella
Carub.0002s2585 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 13374640-13375139 Capsella rubella
Carub.0002s2585 1.0kb upstream 1.0kb upstream 2508 true scaffold_2: 13375140-13377647 Capsella rubella
Carub.0002s2585 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 13376648-13377647 Capsella rubella
Carub.0002s2585 1.0kb downstream 1.0kb downstream 2508 true scaffold_2: 13374140-13376647 Capsella rubella
Carub.0002s2585 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 13374140-13375139 Capsella rubella
Carub.0002s2585 2.0kb upstream 2.0kb upstream 3508 true scaffold_2: 13375140-13378647 Capsella rubella
Carub.0002s2585 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 13376648-13378647 Capsella rubella
Carub.0002s2585 2.0kb downstream 2.0kb downstream 3508 true scaffold_2: 13373140-13376647 Capsella rubella
Carub.0002s2585 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 13373140-13375139 Capsella rubella
Carub.0002s2585 5.0kb upstream 5.0kb upstream 6508 true scaffold_2: 13375140-13381647 Capsella rubella
Carub.0002s2585 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 13376648-13381647 Capsella rubella
Carub.0002s2585 5.0kb downstream 5.0kb downstream 6508 true scaffold_2: 13370140-13376647 Capsella rubella
Carub.0002s2585 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 13370140-13375139 Capsella rubella
Carub.0002s2585 10.0kb upstream 10.0kb upstream 11508 true scaffold_2: 13375140-13386647 Capsella rubella
Carub.0002s2585 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 13376648-13386647 Capsella rubella
Carub.0002s2585 10.0kb downstream 10.0kb downstream 11508 true scaffold_2: 13365140-13376647 Capsella rubella
Carub.0002s2585 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 13365140-13375139 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366246 5261 Brassicaceae View MSA
123831825 5264 Brassicales-Malvales View MSA
124349768 5266 SBM View MSA
124247936 5268 Malvidae View MSA
124064469 5270 Rosid View MSA
123743346 5271 Pentapetalae View MSA
122797720 5272 Eudicot View MSA
122051643 5273 Angiosperm View MSA
121350983 5274 Embryophyte View MSA
123428782 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain