Gene : Carub.0002s2216 C. rubella v1.1
Defline:  (1 of 1) 2.1.3.3 - Ornithine carbamoyltransferase / OTCase Genomic Order:  2216
Name:  ? Carub.0002s2216 Secondary Identifier:  ? PAC:39244958
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella ARGSYNBSUB-PWY Capsella rubella pathologic  
Crubella ARGSYN-PWY Capsella rubella pathologic  
Crubella CITRULBIO-PWY Capsella rubella pathologic  
Crubella CITRULLINE-DEG-PWY Capsella rubella pathologic  
Crubella PWY-4984 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0002s2216 0.5kb upstream 0.5kb upstream 2666 true scaffold_2: 11876027-11878692 Capsella rubella
Carub.0002s2216 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 11878193-11878692 Capsella rubella
Carub.0002s2216 0.5kb downstream 0.5kb downstream 2666 true scaffold_2: 11875527-11878192 Capsella rubella
Carub.0002s2216 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 11875527-11876026 Capsella rubella
Carub.0002s2216 1.0kb upstream 1.0kb upstream 3166 true scaffold_2: 11876027-11879192 Capsella rubella
Carub.0002s2216 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 11878193-11879192 Capsella rubella
Carub.0002s2216 1.0kb downstream 1.0kb downstream 3166 true scaffold_2: 11875027-11878192 Capsella rubella
Carub.0002s2216 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 11875027-11876026 Capsella rubella
Carub.0002s2216 2.0kb upstream 2.0kb upstream 4166 true scaffold_2: 11876027-11880192 Capsella rubella
Carub.0002s2216 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 11878193-11880192 Capsella rubella
Carub.0002s2216 2.0kb downstream 2.0kb downstream 4166 true scaffold_2: 11874027-11878192 Capsella rubella
Carub.0002s2216 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 11874027-11876026 Capsella rubella
Carub.0002s2216 5.0kb upstream 5.0kb upstream 7166 true scaffold_2: 11876027-11883192 Capsella rubella
Carub.0002s2216 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 11878193-11883192 Capsella rubella
Carub.0002s2216 5.0kb downstream 5.0kb downstream 7166 true scaffold_2: 11871027-11878192 Capsella rubella
Carub.0002s2216 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 11871027-11876026 Capsella rubella
Carub.0002s2216 10.0kb upstream 10.0kb upstream 12166 true scaffold_2: 11876027-11888192 Capsella rubella
Carub.0002s2216 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 11878193-11888192 Capsella rubella
Carub.0002s2216 10.0kb downstream 10.0kb downstream 12166 true scaffold_2: 11866027-11878192 Capsella rubella
Carub.0002s2216 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 11866027-11876026 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365362 5261 Brassicaceae View MSA
123830074 5264 Brassicales-Malvales View MSA
124343183 5266 SBM View MSA
124239745 5268 Malvidae View MSA
124068629 5270 Rosid View MSA
123736976 5271 Pentapetalae View MSA
122787582 5272 Eudicot View MSA
122042632 5273 Angiosperm View MSA
121351468 5274 Embryophyte View MSA
123427161 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain