Gene : Carub.0002s2539 C. rubella v1.1
Defline:  (1 of 2) PTHR11801 - SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION Genomic Order:  2539
Name:  ? Carub.0002s2539 Secondary Identifier:  ? PAC:39244728
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Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0002s2539 0.5kb upstream 0.5kb upstream 4273 true scaffold_2: 13211412-13215684 Capsella rubella
Carub.0002s2539 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 13215185-13215684 Capsella rubella
Carub.0002s2539 0.5kb downstream 0.5kb downstream 4273 true scaffold_2: 13210912-13215184 Capsella rubella
Carub.0002s2539 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 13210912-13211411 Capsella rubella
Carub.0002s2539 1.0kb upstream 1.0kb upstream 4773 true scaffold_2: 13211412-13216184 Capsella rubella
Carub.0002s2539 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 13215185-13216184 Capsella rubella
Carub.0002s2539 1.0kb downstream 1.0kb downstream 4773 true scaffold_2: 13210412-13215184 Capsella rubella
Carub.0002s2539 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 13210412-13211411 Capsella rubella
Carub.0002s2539 2.0kb upstream 2.0kb upstream 5773 true scaffold_2: 13211412-13217184 Capsella rubella
Carub.0002s2539 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 13215185-13217184 Capsella rubella
Carub.0002s2539 2.0kb downstream 2.0kb downstream 5773 true scaffold_2: 13209412-13215184 Capsella rubella
Carub.0002s2539 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 13209412-13211411 Capsella rubella
Carub.0002s2539 5.0kb upstream 5.0kb upstream 8773 true scaffold_2: 13211412-13220184 Capsella rubella
Carub.0002s2539 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 13215185-13220184 Capsella rubella
Carub.0002s2539 5.0kb downstream 5.0kb downstream 8773 true scaffold_2: 13206412-13215184 Capsella rubella
Carub.0002s2539 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 13206412-13211411 Capsella rubella
Carub.0002s2539 10.0kb upstream 10.0kb upstream 13773 true scaffold_2: 13211412-13225184 Capsella rubella
Carub.0002s2539 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 13215185-13225184 Capsella rubella
Carub.0002s2539 10.0kb downstream 10.0kb downstream 13773 true scaffold_2: 13201412-13215184 Capsella rubella
Carub.0002s2539 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 13201412-13211411 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376558 5261 Brassicaceae View MSA
123837315 5264 Brassicales-Malvales View MSA
124342395 5266 SBM View MSA
124238773 5268 Malvidae View MSA
124067056 5270 Rosid View MSA
123736368 5271 Pentapetalae View MSA
122785651 5272 Eudicot View MSA
122044134 5273 Angiosperm View MSA
121347247 5274 Embryophyte View MSA
123380519 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain