Gene : Carub.0006s0961 C. rubella v1.1
Defline:  (1 of 2) PTHR12526:SF343 - SUCROSE-PHOSPHATE SYNTHASE 1-RELATED Genomic Order:  961
Name:  ? Carub.0006s0961 Secondary Identifier:  ? PAC:39246704
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7238 Capsella rubella pathologic  
Crubella SUCSYN-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s0961 0.5kb upstream 0.5kb upstream 5303 true scaffold_6: 3505042-3510344 Capsella rubella
Carub.0006s0961 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 3505042-3505541 Capsella rubella
Carub.0006s0961 0.5kb downstream 0.5kb downstream 5303 true scaffold_6: 3505542-3510844 Capsella rubella
Carub.0006s0961 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 3510345-3510844 Capsella rubella
Carub.0006s0961 1.0kb upstream 1.0kb upstream 5803 true scaffold_6: 3504542-3510344 Capsella rubella
Carub.0006s0961 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 3504542-3505541 Capsella rubella
Carub.0006s0961 1.0kb downstream 1.0kb downstream 5803 true scaffold_6: 3505542-3511344 Capsella rubella
Carub.0006s0961 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 3510345-3511344 Capsella rubella
Carub.0006s0961 2.0kb upstream 2.0kb upstream 6803 true scaffold_6: 3503542-3510344 Capsella rubella
Carub.0006s0961 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 3503542-3505541 Capsella rubella
Carub.0006s0961 2.0kb downstream 2.0kb downstream 6803 true scaffold_6: 3505542-3512344 Capsella rubella
Carub.0006s0961 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 3510345-3512344 Capsella rubella
Carub.0006s0961 5.0kb upstream 5.0kb upstream 9803 true scaffold_6: 3500542-3510344 Capsella rubella
Carub.0006s0961 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 3500542-3505541 Capsella rubella
Carub.0006s0961 5.0kb downstream 5.0kb downstream 9803 true scaffold_6: 3505542-3515344 Capsella rubella
Carub.0006s0961 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 3510345-3515344 Capsella rubella
Carub.0006s0961 10.0kb upstream 10.0kb upstream 14803 true scaffold_6: 3495542-3510344 Capsella rubella
Carub.0006s0961 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 3495542-3505541 Capsella rubella
Carub.0006s0961 10.0kb downstream 10.0kb downstream 14803 true scaffold_6: 3505542-3520344 Capsella rubella
Carub.0006s0961 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 3510345-3520344 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362474 5261 Brassicaceae View MSA
123839542 5264 Brassicales-Malvales View MSA
124341610 5266 SBM View MSA
124240542 5268 Malvidae View MSA
124062800 5270 Rosid View MSA
123741512 5271 Pentapetalae View MSA
122790617 5272 Eudicot View MSA
122047849 5273 Angiosperm View MSA
121310805 5274 Embryophyte View MSA
123348202 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain