Gene : Carub.0002s1965 C. rubella v1.1
Defline:  (1 of 3) 4.2.3.1 - Threonine synthase Genomic Order:  1965
Name:  ? Carub.0002s1965 Secondary Identifier:  ? PAC:39245528
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella HOMOSER-THRESYN-PWY Capsella rubella pathologic  
Crubella PWY-3001 Capsella rubella pathologic  
Crubella PWY-724 Capsella rubella pathologic  
Crubella THRESYN-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0002s1965 0.5kb upstream 0.5kb upstream 2375 true scaffold_2: 10985964-10988338 Capsella rubella
Carub.0002s1965 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 10987839-10988338 Capsella rubella
Carub.0002s1965 0.5kb downstream 0.5kb downstream 2375 true scaffold_2: 10985464-10987838 Capsella rubella
Carub.0002s1965 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 10985464-10985963 Capsella rubella
Carub.0002s1965 1.0kb upstream 1.0kb upstream 2875 true scaffold_2: 10985964-10988838 Capsella rubella
Carub.0002s1965 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 10987839-10988838 Capsella rubella
Carub.0002s1965 1.0kb downstream 1.0kb downstream 2875 true scaffold_2: 10984964-10987838 Capsella rubella
Carub.0002s1965 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 10984964-10985963 Capsella rubella
Carub.0002s1965 2.0kb upstream 2.0kb upstream 3875 true scaffold_2: 10985964-10989838 Capsella rubella
Carub.0002s1965 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 10987839-10989838 Capsella rubella
Carub.0002s1965 2.0kb downstream 2.0kb downstream 3875 true scaffold_2: 10983964-10987838 Capsella rubella
Carub.0002s1965 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 10983964-10985963 Capsella rubella
Carub.0002s1965 5.0kb upstream 5.0kb upstream 6875 true scaffold_2: 10985964-10992838 Capsella rubella
Carub.0002s1965 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 10987839-10992838 Capsella rubella
Carub.0002s1965 5.0kb downstream 5.0kb downstream 6875 true scaffold_2: 10980964-10987838 Capsella rubella
Carub.0002s1965 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 10980964-10985963 Capsella rubella
Carub.0002s1965 10.0kb upstream 10.0kb upstream 11875 true scaffold_2: 10985964-10997838 Capsella rubella
Carub.0002s1965 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 10987839-10997838 Capsella rubella
Carub.0002s1965 10.0kb downstream 10.0kb downstream 11875 true scaffold_2: 10975964-10987838 Capsella rubella
Carub.0002s1965 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 10975964-10985963 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041159 5273 Angiosperm View MSA
122375349 5261 Brassicaceae View MSA
123800935 5264 Brassicales-Malvales View MSA
124298290 5266 SBM View MSA
124251759 5268 Malvidae View MSA
124069376 5270 Rosid View MSA
123748441 5271 Pentapetalae View MSA
122786729 5272 Eudicot View MSA
121349368 5274 Embryophyte View MSA
123424940 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain