Gene : Carub.0008s0608 C. rubella v1.1
Defline:  (1 of 16) 2.3.1.133 - Shikimate O-hydroxycinnamoyltransferase Genomic Order:  608
Name:  ? Carub.0008s0608 Secondary Identifier:  ? PAC:39250279
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-361 Capsella rubella pathologic  
Crubella PWY-6039 Capsella rubella pathologic  
Crubella PWY-6040 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0008s0608 0.5kb upstream 0.5kb upstream 2559 true scaffold_8: 2786550-2789108 Capsella rubella
Carub.0008s0608 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 2788609-2789108 Capsella rubella
Carub.0008s0608 0.5kb downstream 0.5kb downstream 2559 true scaffold_8: 2786050-2788608 Capsella rubella
Carub.0008s0608 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 2786050-2786549 Capsella rubella
Carub.0008s0608 1.0kb upstream 1.0kb upstream 3059 true scaffold_8: 2786550-2789608 Capsella rubella
Carub.0008s0608 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 2788609-2789608 Capsella rubella
Carub.0008s0608 1.0kb downstream 1.0kb downstream 3059 true scaffold_8: 2785550-2788608 Capsella rubella
Carub.0008s0608 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 2785550-2786549 Capsella rubella
Carub.0008s0608 2.0kb upstream 2.0kb upstream 4059 true scaffold_8: 2786550-2790608 Capsella rubella
Carub.0008s0608 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 2788609-2790608 Capsella rubella
Carub.0008s0608 2.0kb downstream 2.0kb downstream 4059 true scaffold_8: 2784550-2788608 Capsella rubella
Carub.0008s0608 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 2784550-2786549 Capsella rubella
Carub.0008s0608 5.0kb upstream 5.0kb upstream 7059 true scaffold_8: 2786550-2793608 Capsella rubella
Carub.0008s0608 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 2788609-2793608 Capsella rubella
Carub.0008s0608 5.0kb downstream 5.0kb downstream 7059 true scaffold_8: 2781550-2788608 Capsella rubella
Carub.0008s0608 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 2781550-2786549 Capsella rubella
Carub.0008s0608 10.0kb upstream 10.0kb upstream 12059 true scaffold_8: 2786550-2798608 Capsella rubella
Carub.0008s0608 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 2788609-2798608 Capsella rubella
Carub.0008s0608 10.0kb downstream 10.0kb downstream 12059 true scaffold_8: 2776550-2788608 Capsella rubella
Carub.0008s0608 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 2776550-2786549 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364120 5261 Brassicaceae View MSA
123837047 5264 Brassicales-Malvales View MSA
124344144 5266 SBM View MSA
124238828 5268 Malvidae View MSA
124068484 5270 Rosid View MSA
123747860 5271 Pentapetalae View MSA
122791254 5272 Eudicot View MSA
122051643 5273 Angiosperm View MSA
121350983 5274 Embryophyte View MSA
123428782 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain