Gene : Carub.0008s0885 C. rubella v1.1
Defline:  (1 of 1) PTHR11946:SF82 - ISOLEUCINE--TRNA LIGASE, MITOCHONDRIAL Genomic Order:  885
Name:  ? Carub.0008s0885 Secondary Identifier:  ? PAC:39250582
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella TRNA-CHARGING-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0008s0885 0.5kb upstream 0.5kb upstream 8076 true scaffold_8: 5736561-5744636 Capsella rubella
Carub.0008s0885 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 5744137-5744636 Capsella rubella
Carub.0008s0885 0.5kb downstream 0.5kb downstream 8076 true scaffold_8: 5736061-5744136 Capsella rubella
Carub.0008s0885 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 5736061-5736560 Capsella rubella
Carub.0008s0885 1.0kb upstream 1.0kb upstream 8576 true scaffold_8: 5736561-5745136 Capsella rubella
Carub.0008s0885 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 5744137-5745136 Capsella rubella
Carub.0008s0885 1.0kb downstream 1.0kb downstream 8576 true scaffold_8: 5735561-5744136 Capsella rubella
Carub.0008s0885 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 5735561-5736560 Capsella rubella
Carub.0008s0885 2.0kb upstream 2.0kb upstream 9576 true scaffold_8: 5736561-5746136 Capsella rubella
Carub.0008s0885 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 5744137-5746136 Capsella rubella
Carub.0008s0885 2.0kb downstream 2.0kb downstream 9576 true scaffold_8: 5734561-5744136 Capsella rubella
Carub.0008s0885 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 5734561-5736560 Capsella rubella
Carub.0008s0885 5.0kb upstream 5.0kb upstream 12576 true scaffold_8: 5736561-5749136 Capsella rubella
Carub.0008s0885 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 5744137-5749136 Capsella rubella
Carub.0008s0885 5.0kb downstream 5.0kb downstream 12576 true scaffold_8: 5731561-5744136 Capsella rubella
Carub.0008s0885 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 5731561-5736560 Capsella rubella
Carub.0008s0885 10.0kb upstream 10.0kb upstream 17576 true scaffold_8: 5736561-5754136 Capsella rubella
Carub.0008s0885 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 5744137-5754136 Capsella rubella
Carub.0008s0885 10.0kb downstream 10.0kb downstream 17576 true scaffold_8: 5726561-5744136 Capsella rubella
Carub.0008s0885 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 5726561-5736560 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360799 5261 Brassicaceae View MSA
123829224 5264 Brassicales-Malvales View MSA
124344420 5266 SBM View MSA
124243360 5268 Malvidae View MSA
124064635 5270 Rosid View MSA
123740769 5271 Pentapetalae View MSA
122790755 5272 Eudicot View MSA
122042566 5273 Angiosperm View MSA
121346634 5274 Embryophyte View MSA
123424788 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain