Gene : Carub.0008s0162 C. rubella v1.1
Defline:  (1 of 1) PTHR11712//PTHR11712:SF226 - POLYKETIDE SYNTHASE-RELATED // 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE I, CHLOROPLASTIC Genomic Order:  162
Name:  ? Carub.0008s0162 Secondary Identifier:  ? PAC:39253033
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella FASYN-ELONG-PWY Capsella rubella pathologic  
Crubella PWY-5156 Capsella rubella pathologic  
Crubella PWY-5971 Capsella rubella pathologic  
Crubella PWY-5989 Capsella rubella pathologic  
Crubella PWY-6282 Capsella rubella pathologic  
Crubella PWY-7388 Capsella rubella pathologic  
Crubella PWY-7663 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0008s0162 0.5kb upstream 0.5kb upstream 3339 true scaffold_8: 629815-633153 Capsella rubella
Carub.0008s0162 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 629815-630314 Capsella rubella
Carub.0008s0162 0.5kb downstream 0.5kb downstream 3339 true scaffold_8: 630315-633653 Capsella rubella
Carub.0008s0162 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 633154-633653 Capsella rubella
Carub.0008s0162 1.0kb upstream 1.0kb upstream 3839 true scaffold_8: 629315-633153 Capsella rubella
Carub.0008s0162 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 629315-630314 Capsella rubella
Carub.0008s0162 1.0kb downstream 1.0kb downstream 3839 true scaffold_8: 630315-634153 Capsella rubella
Carub.0008s0162 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 633154-634153 Capsella rubella
Carub.0008s0162 2.0kb upstream 2.0kb upstream 4839 true scaffold_8: 628315-633153 Capsella rubella
Carub.0008s0162 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 628315-630314 Capsella rubella
Carub.0008s0162 2.0kb downstream 2.0kb downstream 4839 true scaffold_8: 630315-635153 Capsella rubella
Carub.0008s0162 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 633154-635153 Capsella rubella
Carub.0008s0162 5.0kb upstream 5.0kb upstream 7839 true scaffold_8: 625315-633153 Capsella rubella
Carub.0008s0162 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 625315-630314 Capsella rubella
Carub.0008s0162 5.0kb downstream 5.0kb downstream 7839 true scaffold_8: 630315-638153 Capsella rubella
Carub.0008s0162 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 633154-638153 Capsella rubella
Carub.0008s0162 10.0kb upstream 10.0kb upstream 12839 true scaffold_8: 620315-633153 Capsella rubella
Carub.0008s0162 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 620315-630314 Capsella rubella
Carub.0008s0162 10.0kb downstream 10.0kb downstream 12839 true scaffold_8: 630315-643153 Capsella rubella
Carub.0008s0162 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 633154-643153 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363213 5261 Brassicaceae View MSA
123833977 5264 Brassicales-Malvales View MSA
124343776 5266 SBM View MSA
124240584 5268 Malvidae View MSA
124064004 5270 Rosid View MSA
123747178 5271 Pentapetalae View MSA
122792015 5272 Eudicot View MSA
122044089 5273 Angiosperm View MSA
121347391 5274 Embryophyte View MSA
123426303 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain