Gene : Carub.0008s0467 C. rubella v1.1
Defline:  (1 of 1) 5.3.1.23 - S-methyl-5-thioribose-1-phosphate isomerase / S-methyl-5-thio-D-ribose-1-phosphate aldose-ketose-isomerase Genomic Order:  467
Name:  ? Carub.0008s0467 Secondary Identifier:  ? PAC:39251559
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-4361 Capsella rubella pathologic  
Crubella PWY-7270 Capsella rubella pathologic  
Crubella PWY-7528 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0008s0467 0.5kb upstream 0.5kb upstream 2709 true scaffold_8: 2007158-2009866 Capsella rubella
Carub.0008s0467 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 2007158-2007657 Capsella rubella
Carub.0008s0467 0.5kb downstream 0.5kb downstream 2709 true scaffold_8: 2007658-2010366 Capsella rubella
Carub.0008s0467 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 2009867-2010366 Capsella rubella
Carub.0008s0467 1.0kb upstream 1.0kb upstream 3209 true scaffold_8: 2006658-2009866 Capsella rubella
Carub.0008s0467 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 2006658-2007657 Capsella rubella
Carub.0008s0467 1.0kb downstream 1.0kb downstream 3209 true scaffold_8: 2007658-2010866 Capsella rubella
Carub.0008s0467 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 2009867-2010866 Capsella rubella
Carub.0008s0467 2.0kb upstream 2.0kb upstream 4209 true scaffold_8: 2005658-2009866 Capsella rubella
Carub.0008s0467 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 2005658-2007657 Capsella rubella
Carub.0008s0467 2.0kb downstream 2.0kb downstream 4209 true scaffold_8: 2007658-2011866 Capsella rubella
Carub.0008s0467 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 2009867-2011866 Capsella rubella
Carub.0008s0467 5.0kb upstream 5.0kb upstream 7209 true scaffold_8: 2002658-2009866 Capsella rubella
Carub.0008s0467 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 2002658-2007657 Capsella rubella
Carub.0008s0467 5.0kb downstream 5.0kb downstream 7209 true scaffold_8: 2007658-2014866 Capsella rubella
Carub.0008s0467 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 2009867-2014866 Capsella rubella
Carub.0008s0467 10.0kb upstream 10.0kb upstream 12209 true scaffold_8: 1997658-2009866 Capsella rubella
Carub.0008s0467 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 1997658-2007657 Capsella rubella
Carub.0008s0467 10.0kb downstream 10.0kb downstream 12209 true scaffold_8: 2007658-2019866 Capsella rubella
Carub.0008s0467 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 2009867-2019866 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360311 5261 Brassicaceae View MSA
123829438 5264 Brassicales-Malvales View MSA
124345905 5266 SBM View MSA
124238790 5268 Malvidae View MSA
124060423 5270 Rosid View MSA
123740094 5271 Pentapetalae View MSA
122788864 5272 Eudicot View MSA
122043863 5273 Angiosperm View MSA
121310201 5274 Embryophyte View MSA
123428305 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain