Gene : Carub.0008s0475 C. rubella v1.1
Defline:  (1 of 1) PTHR33428//PTHR33428:SF1 - FAMILY NOT NAMED // CHLOROPHYLLASE-2, CHLOROPLASTIC Genomic Order:  475
Name:  ? Carub.0008s0475 Secondary Identifier:  ? PAC:39252810
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5098 Capsella rubella pathologic  
Crubella PWY-6927 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0008s0475 0.5kb upstream 0.5kb upstream 2127 true scaffold_8: 2070569-2072695 Capsella rubella
Carub.0008s0475 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 2072196-2072695 Capsella rubella
Carub.0008s0475 0.5kb downstream 0.5kb downstream 2127 true scaffold_8: 2070069-2072195 Capsella rubella
Carub.0008s0475 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 2070069-2070568 Capsella rubella
Carub.0008s0475 1.0kb upstream 1.0kb upstream 2627 true scaffold_8: 2070569-2073195 Capsella rubella
Carub.0008s0475 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 2072196-2073195 Capsella rubella
Carub.0008s0475 1.0kb downstream 1.0kb downstream 2627 true scaffold_8: 2069569-2072195 Capsella rubella
Carub.0008s0475 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 2069569-2070568 Capsella rubella
Carub.0008s0475 2.0kb upstream 2.0kb upstream 3627 true scaffold_8: 2070569-2074195 Capsella rubella
Carub.0008s0475 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 2072196-2074195 Capsella rubella
Carub.0008s0475 2.0kb downstream 2.0kb downstream 3627 true scaffold_8: 2068569-2072195 Capsella rubella
Carub.0008s0475 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 2068569-2070568 Capsella rubella
Carub.0008s0475 5.0kb upstream 5.0kb upstream 6627 true scaffold_8: 2070569-2077195 Capsella rubella
Carub.0008s0475 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 2072196-2077195 Capsella rubella
Carub.0008s0475 5.0kb downstream 5.0kb downstream 6627 true scaffold_8: 2065569-2072195 Capsella rubella
Carub.0008s0475 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 2065569-2070568 Capsella rubella
Carub.0008s0475 10.0kb upstream 10.0kb upstream 11627 true scaffold_8: 2070569-2082195 Capsella rubella
Carub.0008s0475 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 2072196-2082195 Capsella rubella
Carub.0008s0475 10.0kb downstream 10.0kb downstream 11627 true scaffold_8: 2060569-2072195 Capsella rubella
Carub.0008s0475 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 2060569-2070568 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368373 5261 Brassicaceae View MSA
123830139 5264 Brassicales-Malvales View MSA
124340382 5266 SBM View MSA
124250638 5268 Malvidae View MSA
124065690 5270 Rosid View MSA
123737382 5271 Pentapetalae View MSA
122788570 5272 Eudicot View MSA
122043389 5273 Angiosperm View MSA
121344751 5274 Embryophyte View MSA
123428003 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain