Gene : Carub.0008s0083 C. rubella v1.1
Defline:  (1 of 3) PTHR31517:SF11 - PEROXIDASE 31-RELATED Genomic Order:  83
Name:  ? Carub.0008s0083 Secondary Identifier:  ? PAC:39252892
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5466 Capsella rubella pathologic  
Crubella PWY-7214 Capsella rubella pathologic  
Crubella PWY-7445 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0008s0083 0.5kb upstream 0.5kb upstream 1484 true scaffold_8: 330440-331923 Capsella rubella
Carub.0008s0083 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 330440-330939 Capsella rubella
Carub.0008s0083 0.5kb downstream 0.5kb downstream 1484 true scaffold_8: 330940-332423 Capsella rubella
Carub.0008s0083 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 331924-332423 Capsella rubella
Carub.0008s0083 1.0kb upstream 1.0kb upstream 1984 true scaffold_8: 329940-331923 Capsella rubella
Carub.0008s0083 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 329940-330939 Capsella rubella
Carub.0008s0083 1.0kb downstream 1.0kb downstream 1984 true scaffold_8: 330940-332923 Capsella rubella
Carub.0008s0083 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 331924-332923 Capsella rubella
Carub.0008s0083 2.0kb upstream 2.0kb upstream 2984 true scaffold_8: 328940-331923 Capsella rubella
Carub.0008s0083 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 328940-330939 Capsella rubella
Carub.0008s0083 2.0kb downstream 2.0kb downstream 2984 true scaffold_8: 330940-333923 Capsella rubella
Carub.0008s0083 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 331924-333923 Capsella rubella
Carub.0008s0083 5.0kb upstream 5.0kb upstream 5984 true scaffold_8: 325940-331923 Capsella rubella
Carub.0008s0083 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 325940-330939 Capsella rubella
Carub.0008s0083 5.0kb downstream 5.0kb downstream 5984 true scaffold_8: 330940-336923 Capsella rubella
Carub.0008s0083 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 331924-336923 Capsella rubella
Carub.0008s0083 10.0kb upstream 10.0kb upstream 10984 true scaffold_8: 320940-331923 Capsella rubella
Carub.0008s0083 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 320940-330939 Capsella rubella
Carub.0008s0083 10.0kb downstream 10.0kb downstream 10984 true scaffold_8: 330940-341923 Capsella rubella
Carub.0008s0083 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 331924-341923 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365146 5261 Brassicaceae View MSA
123839125 5264 Brassicales-Malvales View MSA
124339069 5266 SBM View MSA
124243658 5268 Malvidae View MSA
124069813 5270 Rosid View MSA
123741716 5271 Pentapetalae View MSA
122795989 5272 Eudicot View MSA
122048017 5273 Angiosperm View MSA
121351674 5274 Embryophyte View MSA
123426672 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain