Gene : Carub.0008s0006 C. rubella v1.1
Defline:  (1 of 2) 2.3.1.9 - Acetyl-CoA C-acetyltransferase / Acetoacetyl-CoA thiolase Genomic Order:  6
Name:  ? Carub.0008s0006 Secondary Identifier:  ? PAC:39252971
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella ILEUDEG-PWY Capsella rubella pathologic  
Crubella PWY-5910 Capsella rubella pathologic  
Crubella PWY-922 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0008s0006 0.5kb upstream 0.5kb upstream 3040 true scaffold_8: 17245-20284 Capsella rubella
Carub.0008s0006 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 19785-20284 Capsella rubella
Carub.0008s0006 0.5kb downstream 0.5kb downstream 3040 true scaffold_8: 16745-19784 Capsella rubella
Carub.0008s0006 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 16745-17244 Capsella rubella
Carub.0008s0006 1.0kb upstream 1.0kb upstream 3540 true scaffold_8: 17245-20784 Capsella rubella
Carub.0008s0006 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 19785-20784 Capsella rubella
Carub.0008s0006 1.0kb downstream 1.0kb downstream 3540 true scaffold_8: 16245-19784 Capsella rubella
Carub.0008s0006 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 16245-17244 Capsella rubella
Carub.0008s0006 2.0kb upstream 2.0kb upstream 4540 true scaffold_8: 17245-21784 Capsella rubella
Carub.0008s0006 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 19785-21784 Capsella rubella
Carub.0008s0006 2.0kb downstream 2.0kb downstream 4540 true scaffold_8: 15245-19784 Capsella rubella
Carub.0008s0006 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 15245-17244 Capsella rubella
Carub.0008s0006 5.0kb upstream 5.0kb upstream 7540 true scaffold_8: 17245-24784 Capsella rubella
Carub.0008s0006 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 19785-24784 Capsella rubella
Carub.0008s0006 5.0kb downstream 5.0kb downstream 7540 true scaffold_8: 12245-19784 Capsella rubella
Carub.0008s0006 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 12245-17244 Capsella rubella
Carub.0008s0006 10.0kb upstream 10.0kb upstream 12540 true scaffold_8: 17245-29784 Capsella rubella
Carub.0008s0006 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 19785-29784 Capsella rubella
Carub.0008s0006 10.0kb downstream 10.0kb downstream 12540 true scaffold_8: 7245-19784 Capsella rubella
Carub.0008s0006 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 7245-17244 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366362 5261 Brassicaceae View MSA
123830193 5264 Brassicales-Malvales View MSA
124338092 5266 SBM View MSA
124247085 5268 Malvidae View MSA
124066506 5270 Rosid View MSA
123747270 5271 Pentapetalae View MSA
122788364 5272 Eudicot View MSA
122045789 5273 Angiosperm View MSA
121344005 5274 Embryophyte View MSA
123427573 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain