Gene : Carub.0002s0477 C. rubella v1.1
Defline:  (1 of 1) 4.1.3.36 - 1,4-dihydroxy-2-naphthoyl-CoA synthase / o-succinylbenzoyl-CoA 1,4-dihydroxy-2-naphthoate-lyase (cyclizing) Genomic Order:  477
Name:  ? Carub.0002s0477 Secondary Identifier:  ? PAC:39244017
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5837 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0002s0477 0.5kb upstream 0.5kb upstream 2895 true scaffold_2: 1977953-1980847 Capsella rubella
Carub.0002s0477 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 1977953-1978452 Capsella rubella
Carub.0002s0477 0.5kb downstream 0.5kb downstream 2895 true scaffold_2: 1978453-1981347 Capsella rubella
Carub.0002s0477 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 1980848-1981347 Capsella rubella
Carub.0002s0477 1.0kb upstream 1.0kb upstream 3395 true scaffold_2: 1977453-1980847 Capsella rubella
Carub.0002s0477 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 1977453-1978452 Capsella rubella
Carub.0002s0477 1.0kb downstream 1.0kb downstream 3395 true scaffold_2: 1978453-1981847 Capsella rubella
Carub.0002s0477 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 1980848-1981847 Capsella rubella
Carub.0002s0477 2.0kb upstream 2.0kb upstream 4395 true scaffold_2: 1976453-1980847 Capsella rubella
Carub.0002s0477 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 1976453-1978452 Capsella rubella
Carub.0002s0477 2.0kb downstream 2.0kb downstream 4395 true scaffold_2: 1978453-1982847 Capsella rubella
Carub.0002s0477 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 1980848-1982847 Capsella rubella
Carub.0002s0477 5.0kb upstream 5.0kb upstream 7395 true scaffold_2: 1973453-1980847 Capsella rubella
Carub.0002s0477 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 1973453-1978452 Capsella rubella
Carub.0002s0477 5.0kb downstream 5.0kb downstream 7395 true scaffold_2: 1978453-1985847 Capsella rubella
Carub.0002s0477 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 1980848-1985847 Capsella rubella
Carub.0002s0477 10.0kb upstream 10.0kb upstream 12395 true scaffold_2: 1968453-1980847 Capsella rubella
Carub.0002s0477 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 1968453-1978452 Capsella rubella
Carub.0002s0477 10.0kb downstream 10.0kb downstream 12395 true scaffold_2: 1978453-1990847 Capsella rubella
Carub.0002s0477 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 1980848-1990847 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365259 5261 Brassicaceae View MSA
123830601 5264 Brassicales-Malvales View MSA
124337572 5266 SBM View MSA
124237230 5268 Malvidae View MSA
124066910 5270 Rosid View MSA
123738598 5271 Pentapetalae View MSA
122786230 5272 Eudicot View MSA
122043180 5273 Angiosperm View MSA
121346128 5274 Embryophyte View MSA
123423771 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain