Gene : Carub.0002s0486 C. rubella v1.1
Defline:  (1 of 2) PTHR11183//PTHR11183:SF53 - GLYCOGENIN // GALACTINOL SYNTHASE 4-RELATED Genomic Order:  486
Name:  ? Carub.0002s0486 Secondary Identifier:  ? PAC:39243296
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5337 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0002s0486 0.5kb upstream 0.5kb upstream 1796 true scaffold_2: 2014553-2016348 Capsella rubella
Carub.0002s0486 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 2014553-2015052 Capsella rubella
Carub.0002s0486 0.5kb downstream 0.5kb downstream 1796 true scaffold_2: 2015053-2016848 Capsella rubella
Carub.0002s0486 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 2016349-2016848 Capsella rubella
Carub.0002s0486 1.0kb upstream 1.0kb upstream 2296 true scaffold_2: 2014053-2016348 Capsella rubella
Carub.0002s0486 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 2014053-2015052 Capsella rubella
Carub.0002s0486 1.0kb downstream 1.0kb downstream 2296 true scaffold_2: 2015053-2017348 Capsella rubella
Carub.0002s0486 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 2016349-2017348 Capsella rubella
Carub.0002s0486 2.0kb upstream 2.0kb upstream 3296 true scaffold_2: 2013053-2016348 Capsella rubella
Carub.0002s0486 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 2013053-2015052 Capsella rubella
Carub.0002s0486 2.0kb downstream 2.0kb downstream 3296 true scaffold_2: 2015053-2018348 Capsella rubella
Carub.0002s0486 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 2016349-2018348 Capsella rubella
Carub.0002s0486 5.0kb upstream 5.0kb upstream 6296 true scaffold_2: 2010053-2016348 Capsella rubella
Carub.0002s0486 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 2010053-2015052 Capsella rubella
Carub.0002s0486 5.0kb downstream 5.0kb downstream 6296 true scaffold_2: 2015053-2021348 Capsella rubella
Carub.0002s0486 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 2016349-2021348 Capsella rubella
Carub.0002s0486 10.0kb upstream 10.0kb upstream 11296 true scaffold_2: 2005053-2016348 Capsella rubella
Carub.0002s0486 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 2005053-2015052 Capsella rubella
Carub.0002s0486 10.0kb downstream 10.0kb downstream 11296 true scaffold_2: 2015053-2026348 Capsella rubella
Carub.0002s0486 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 2016349-2026348 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370794 5261 Brassicaceae View MSA
123829089 5264 Brassicales-Malvales View MSA
124338384 5266 SBM View MSA
124242793 5268 Malvidae View MSA
124061289 5270 Rosid View MSA
123746069 5271 Pentapetalae View MSA
122793646 5272 Eudicot View MSA
122046900 5273 Angiosperm View MSA
121310671 5274 Embryophyte View MSA
123348097 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain