Gene : Carub.0002s0490 C. rubella v1.1
Defline:  (1 of 1) PTHR12280//PTHR12280:SF26 - PANTOTHENATE KINASE // SUBFAMILY NOT NAMED Genomic Order:  490
Name:  ? Carub.0002s0490 Secondary Identifier:  ? PAC:39243145
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PANTO-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0002s0490 0.5kb upstream 0.5kb upstream 3353 true scaffold_2: 2026569-2029921 Capsella rubella
Carub.0002s0490 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 2026569-2027068 Capsella rubella
Carub.0002s0490 0.5kb downstream 0.5kb downstream 3353 true scaffold_2: 2027069-2030421 Capsella rubella
Carub.0002s0490 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 2029922-2030421 Capsella rubella
Carub.0002s0490 1.0kb upstream 1.0kb upstream 3853 true scaffold_2: 2026069-2029921 Capsella rubella
Carub.0002s0490 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 2026069-2027068 Capsella rubella
Carub.0002s0490 1.0kb downstream 1.0kb downstream 3853 true scaffold_2: 2027069-2030921 Capsella rubella
Carub.0002s0490 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 2029922-2030921 Capsella rubella
Carub.0002s0490 2.0kb upstream 2.0kb upstream 4853 true scaffold_2: 2025069-2029921 Capsella rubella
Carub.0002s0490 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 2025069-2027068 Capsella rubella
Carub.0002s0490 2.0kb downstream 2.0kb downstream 4853 true scaffold_2: 2027069-2031921 Capsella rubella
Carub.0002s0490 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 2029922-2031921 Capsella rubella
Carub.0002s0490 5.0kb upstream 5.0kb upstream 7853 true scaffold_2: 2022069-2029921 Capsella rubella
Carub.0002s0490 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 2022069-2027068 Capsella rubella
Carub.0002s0490 5.0kb downstream 5.0kb downstream 7853 true scaffold_2: 2027069-2034921 Capsella rubella
Carub.0002s0490 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 2029922-2034921 Capsella rubella
Carub.0002s0490 10.0kb upstream 10.0kb upstream 12853 true scaffold_2: 2017069-2029921 Capsella rubella
Carub.0002s0490 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 2017069-2027068 Capsella rubella
Carub.0002s0490 10.0kb downstream 10.0kb downstream 12853 true scaffold_2: 2027069-2039921 Capsella rubella
Carub.0002s0490 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 2029922-2039921 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366539 5261 Brassicaceae View MSA
123830738 5264 Brassicales-Malvales View MSA
124342070 5266 SBM View MSA
124250163 5268 Malvidae View MSA
124068622 5270 Rosid View MSA
123738077 5271 Pentapetalae View MSA
122769910 5272 Eudicot View MSA
122042911 5273 Angiosperm View MSA
121349290 5274 Embryophyte View MSA
123381257 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain