Gene : Carub.0002s0537 C. rubella v1.1
Defline:  (1 of 3) K00161 - pyruvate dehydrogenase E1 component alpha subunit (PDHA, pdhA) Genomic Order:  537
Name:  ? Carub.0002s0537 Secondary Identifier:  ? PAC:39243014
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5173 Capsella rubella pathologic  
Crubella PWY-5464 Capsella rubella pathologic  
Crubella PYRUVDEHYD-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0002s0537 0.5kb upstream 0.5kb upstream 3067 true scaffold_2: 2251112-2254178 Capsella rubella
Carub.0002s0537 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 2253679-2254178 Capsella rubella
Carub.0002s0537 0.5kb downstream 0.5kb downstream 3067 true scaffold_2: 2250612-2253678 Capsella rubella
Carub.0002s0537 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 2250612-2251111 Capsella rubella
Carub.0002s0537 1.0kb upstream 1.0kb upstream 3567 true scaffold_2: 2251112-2254678 Capsella rubella
Carub.0002s0537 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 2253679-2254678 Capsella rubella
Carub.0002s0537 1.0kb downstream 1.0kb downstream 3567 true scaffold_2: 2250112-2253678 Capsella rubella
Carub.0002s0537 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 2250112-2251111 Capsella rubella
Carub.0002s0537 2.0kb upstream 2.0kb upstream 4567 true scaffold_2: 2251112-2255678 Capsella rubella
Carub.0002s0537 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 2253679-2255678 Capsella rubella
Carub.0002s0537 2.0kb downstream 2.0kb downstream 4567 true scaffold_2: 2249112-2253678 Capsella rubella
Carub.0002s0537 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 2249112-2251111 Capsella rubella
Carub.0002s0537 5.0kb upstream 5.0kb upstream 7567 true scaffold_2: 2251112-2258678 Capsella rubella
Carub.0002s0537 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 2253679-2258678 Capsella rubella
Carub.0002s0537 5.0kb downstream 5.0kb downstream 7567 true scaffold_2: 2246112-2253678 Capsella rubella
Carub.0002s0537 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 2246112-2251111 Capsella rubella
Carub.0002s0537 10.0kb upstream 10.0kb upstream 12567 true scaffold_2: 2251112-2263678 Capsella rubella
Carub.0002s0537 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 2253679-2263678 Capsella rubella
Carub.0002s0537 10.0kb downstream 10.0kb downstream 12567 true scaffold_2: 2241112-2253678 Capsella rubella
Carub.0002s0537 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 2241112-2251111 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378692 5261 Brassicaceae View MSA
123838646 5264 Brassicales-Malvales View MSA
124346461 5266 SBM View MSA
124239887 5268 Malvidae View MSA
124066466 5270 Rosid View MSA
123744027 5271 Pentapetalae View MSA
122788942 5272 Eudicot View MSA
122045712 5273 Angiosperm View MSA
121344698 5274 Embryophyte View MSA
123425832 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain